Using Jupyter Notebook (AEN 4.1.3)
==================================

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    <div class="contents local topic" id="contents">
    <ul class="simple">
    <li><a class="reference internal" href="#opening-the-jupyter-notebook-application" id="id1">Opening the Jupyter Notebook application</a></li>
    <li><a class="reference internal" href="#using-example-notebooks" id="id2">Using example notebooks</a></li>
    <li><a class="reference internal" href="#creating-a-new-jupyter-notebook" id="id3">Creating a new Jupyter Notebook</a></li>
    </ul>
    </div>
    <p>The Jupyter Notebook application allows you to create and edit
    documents that display the input and output of a Python or R
    language script. Once saved, you can share these files with
    others.</p>
    <p>NOTE: Python and R language are included by default, but with
    customization, Notebook can run several other kernel environments.</p>
    <p>This page provides a brief introduction to Jupyter Notebooks for
    AEN users.</p>
    <p>For the official Jupyter Notebook user instructions, see
    <a class="reference external" href="http://jupyter.readthedocs.org/en/latest/">Jupyter documentation</a>.</p>
    <p>For information on the notebook extensions available in AEN, see
    <a class="reference internal" href="use-notebook-extensions.html"><span class="doc">Using Jupyter Notebook extensions</span></a>.</p>
    <div class="section" id="opening-the-jupyter-notebook-application">
    <h2><a class="toc-backref" href="#id1">Opening the Jupyter Notebook application</a><a class="headerlink" href="#opening-the-jupyter-notebook-application" title="Permalink to this headline">¶</a></h2>
    <ol class="arabic">
    <li><p class="first">Log in to AEN.</p>
    </li>
    <li><p class="first">Select the project you want to work on, or create a new project and open it.</p>
    </li>
    <li><p class="first">On the project home page, click the Jupyter Notebook icon:</p>
    <div class="figure">
    <img alt="../../../../../../_images/ae-notebooks/4.1.3/aen-user-finding-jupyter.png" src="../../../../../../_images/ae-notebooks/4.1.3/aen-user-finding-jupyter.png" />
    </div>
    <div class="line-block">
    <div class="line"><br /></div>
    </div>
    <p>Jupyter Notebook opens in a new browser window:</p>
    <div class="figure">
    <img alt="../../../../../../_images/ae-notebooks/4.1.3/aen-user-jupyter_main41.png" src="../../../../../../_images/ae-notebooks/4.1.3/aen-user-jupyter_main41.png" />
    </div>
    <div class="line-block">
    <div class="line"><br /></div>
    </div>
    <p>TIP: You can see the same <a class="reference internal" href="../use-workbench.html#file-man"><span class="std std-ref">File Manager</span></a> in
    the Terminal, Workbench, and Viewer applications.</p>
    </li>
    </ol>
    </div>
    <div class="section" id="using-example-notebooks">
    <h2><a class="toc-backref" href="#id2">Using example notebooks</a><a class="headerlink" href="#using-example-notebooks" title="Permalink to this headline">¶</a></h2>
    <p>The <code class="docutils literal"><span class="pre">Examples</span></code> folder in Jupyter Notebook contains several
    types of Notebook examples created in Python&#8212;and one with R
    language&#8212;kernel environments.</p>
    <p>Open any example notebook to experiment and see how it works.</p>
    </div>
    <div class="section" id="creating-a-new-jupyter-notebook">
    <h2><a class="toc-backref" href="#id3">Creating a new Jupyter Notebook</a><a class="headerlink" href="#creating-a-new-jupyter-notebook" title="Permalink to this headline">¶</a></h2>
    <ol class="arabic">
    <li><p class="first">An the top right of the <strong>Files</strong> tab, click the New button.</p>
    <div class="figure">
    <img alt="../../../../../../_images/ae-notebooks/4.1.3/aen-user-kernel-menu41.png" src="../../../../../../_images/ae-notebooks/4.1.3/aen-user-kernel-menu41.png" />
    </div>
    <div class="line-block">
    <div class="line"><br /></div>
    </div>
    </li>
    <li><p class="first">Select the kernel environment to create your new notebook in.</p>
    <p>NOTE: Customizable Python and R Language kernel environments
    are automatically created for you during project creation.</p>
    <ul class="simple">
    <li>Your project&#8217;s default conda env kernels are a cloned copy
    of the root environment. You can customize them and install and
    delete additional packages.</li>
    <li>Root environment is managed by your Administrator. You cannot
    make or save any changes to it.</li>
    <li>You can switch between Python, R language and any other
    custom kernels in the notebook as you work in your notebook.
    For more information, see <a class="reference internal" href="use-synchronize-ext.html"><span class="doc">Using the Synchronize Environments extension</span></a>.</li>
    </ul>
    <p>The new notebook is saved in the related project directory
    and displayed.</p>
    </li>
    </ol>
    </div>
