LICENSE
MANIFEST.in
README.rst
setup.py
doc/8schools.stan
doc/Makefile
doc/api.rst
doc/avoiding_recompilation.rst
doc/conf.py
doc/conversion.rst
doc/differences_pystan_rstan.rst
doc/getting_started.rst
doc/index.rst
doc/installation_beginner.rst
doc/installation_cvodes.rst
doc/logging.rst
doc/optimizing.rst
doc/release-howto.rst
doc/threading_support.rst
doc/whats_new.rst
doc/windows.rst
doc/sphinxext/LICENSE.txt
doc/sphinxext/MANIFEST.in
doc/sphinxext/README.txt
doc/sphinxext/setup.py
doc/sphinxext/numpydoc/__init__.py
doc/sphinxext/numpydoc/comment_eater.py
doc/sphinxext/numpydoc/compiler_unparse.py
doc/sphinxext/numpydoc/docscrape.py
doc/sphinxext/numpydoc/docscrape_sphinx.py
doc/sphinxext/numpydoc/linkcode.py
doc/sphinxext/numpydoc/numpydoc.py
doc/sphinxext/numpydoc/phantom_import.py
doc/sphinxext/numpydoc/plot_directive.py
doc/sphinxext/numpydoc/traitsdoc.py
doc/sphinxext/numpydoc/tests/test_docscrape.py
doc/sphinxext/numpydoc/tests/test_linkcode.py
doc/sphinxext/numpydoc/tests/test_phantom_import.py
doc/sphinxext/numpydoc/tests/test_plot_directive.py
doc/sphinxext/numpydoc/tests/test_traitsdoc.py
pystan/__init__.py
pystan/_api.cpp
pystan/_chains.cpp
pystan/_compat.py
pystan/_misc.cpp
pystan/api.py
pystan/chains.py
pystan/constants.py
pystan/diagnostics.py
pystan/lookup.py
pystan/misc.py
pystan/model.py
pystan/plots.py
pystan.egg-info/PKG-INFO
pystan.egg-info/SOURCES.txt
pystan.egg-info/dependency_links.txt
pystan.egg-info/not-zip-safe
pystan.egg-info/requires.txt
pystan.egg-info/top_level.txt
pystan/experimental/__init__.py
pystan/experimental/misc.py
pystan/external/__init__.py
pystan/external/enum/__init__.py
pystan/external/enum/enum.py
pystan/external/pymc/__init__.py
pystan/external/pymc/plots.py
pystan/external/pymc/stats.py
pystan/external/pymc/trace.py
pystan/external/scipy/__init__.py
pystan/external/scipy/mstats.py
pystan/stan/src/stan/lang/ast_def.cpp
pystan/stan/src/stan/lang/grammars/bare_type_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/expression07_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/expression_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/functions_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/indexes_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/program_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/semantic_actions_def.cpp
pystan/stan/src/stan/lang/grammars/statement_2_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/statement_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/term_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/var_decls_grammar_inst.cpp
pystan/stan/src/stan/lang/grammars/whitespace_grammar_inst.cpp
pystan/tests/__init__.py
pystan/tests/helper.py
pystan/tests/test_basic.py
pystan/tests/test_basic_array.py
pystan/tests/test_basic_matrix.py
pystan/tests/test_basic_pars.py
pystan/tests/test_chains.py
pystan/tests/test_covexpquad.py
pystan/tests/test_ess.py
pystan/tests/test_extra_compile_args.py
pystan/tests/test_extract.py
pystan/tests/test_fixed_param.py
pystan/tests/test_generated_quantities_seed.py
pystan/tests/test_linear_regression.py
pystan/tests/test_lookup.py
pystan/tests/test_misc.py
pystan/tests/test_misc_args.py
pystan/tests/test_optimizing_example.py
pystan/tests/test_pickle.py
pystan/tests/test_posterior_means.py
pystan/tests/test_rstan_getting_started.py
pystan/tests/test_rstan_stan_args.py
pystan/tests/test_rstan_stanfit.py
pystan/tests/test_rstan_testoptim.py
pystan/tests/test_stan_file_io.py
pystan/tests/test_stanc.py
pystan/tests/test_unconstrain_pars.py
pystan/tests/test_user_inits.py
pystan/tests/test_utf8.py
pystan/tests/test_vb.py