import itertools
import numpy as np
import pytest

from skimage import restoration, data, color, img_as_float
from skimage.metrics import structural_similarity
from skimage.metrics import peak_signal_noise_ratio
from skimage.restoration._denoise import _wavelet_threshold
import pywt

from skimage._shared import testing
from skimage._shared.testing import (assert_equal, assert_almost_equal,
                                     assert_warns, assert_)
from skimage._shared._warnings import expected_warnings
from distutils.version import LooseVersion as Version


try:
    import dask
except ImportError:
    DASK_NOT_INSTALLED_WARNING = 'The optional dask dependency is not installed'
else:
    DASK_NOT_INSTALLED_WARNING = None


np.random.seed(1234)


astro = img_as_float(data.astronaut()[:128, :128])
astro_gray = color.rgb2gray(astro)
checkerboard_gray = img_as_float(data.checkerboard())
checkerboard = color.gray2rgb(checkerboard_gray)
# versions with one odd-sized dimension
astro_gray_odd = astro_gray[:, :-1]
astro_odd = astro[:, :-1]


def test_denoise_tv_chambolle_2d():
    # astronaut image
    img = astro_gray.copy()
    # add noise to astronaut
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    # clip noise so that it does not exceed allowed range for float images.
    img = np.clip(img, 0, 1)
    # denoise
    denoised_astro = restoration.denoise_tv_chambolle(img, weight=0.1)
    # which dtype?
    assert_(denoised_astro.dtype in [np.float, np.float32, np.float64])
    from scipy import ndimage as ndi
    grad = ndi.morphological_gradient(img, size=((3, 3)))
    grad_denoised = ndi.morphological_gradient(denoised_astro, size=((3, 3)))
    # test if the total variation has decreased
    assert_(grad_denoised.dtype == np.float)
    assert_(np.sqrt((grad_denoised**2).sum()) < np.sqrt((grad**2).sum()))


def test_denoise_tv_chambolle_multichannel():
    denoised0 = restoration.denoise_tv_chambolle(astro[..., 0], weight=0.1)
    denoised = restoration.denoise_tv_chambolle(astro, weight=0.1,
                                                multichannel=True)
    assert_equal(denoised[..., 0], denoised0)

    # tile astronaut subset to generate 3D+channels data
    astro3 = np.tile(astro[:64, :64, np.newaxis, :], [1, 1, 2, 1])
    # modify along tiled dimension to give non-zero gradient on 3rd axis
    astro3[:, :, 0, :] = 2*astro3[:, :, 0, :]
    denoised0 = restoration.denoise_tv_chambolle(astro3[..., 0], weight=0.1)
    denoised = restoration.denoise_tv_chambolle(astro3, weight=0.1,
                                                multichannel=True)
    assert_equal(denoised[..., 0], denoised0)


def test_denoise_tv_chambolle_float_result_range():
    # astronaut image
    img = astro_gray
    int_astro = np.multiply(img, 255).astype(np.uint8)
    assert_(np.max(int_astro) > 1)
    denoised_int_astro = restoration.denoise_tv_chambolle(int_astro,
                                                          weight=0.1)
    # test if the value range of output float data is within [0.0:1.0]
    assert_(denoised_int_astro.dtype == np.float)
    assert_(np.max(denoised_int_astro) <= 1.0)
    assert_(np.min(denoised_int_astro) >= 0.0)


def test_denoise_tv_chambolle_3d():
    """Apply the TV denoising algorithm on a 3D image representing a sphere."""
    x, y, z = np.ogrid[0:40, 0:40, 0:40]
    mask = (x - 22)**2 + (y - 20)**2 + (z - 17)**2 < 8**2
    mask = 100 * mask.astype(np.float)
    mask += 60
    mask += 20 * np.random.rand(*mask.shape)
    mask[mask < 0] = 0
    mask[mask > 255] = 255
    res = restoration.denoise_tv_chambolle(mask.astype(np.uint8), weight=0.1)
    assert_(res.dtype == np.float)
    assert_(res.std() * 255 < mask.std())


def test_denoise_tv_chambolle_1d():
    """Apply the TV denoising algorithm on a 1D sinusoid."""
    x = 125 + 100*np.sin(np.linspace(0, 8*np.pi, 1000))
    x += 20 * np.random.rand(x.size)
    x = np.clip(x, 0, 255)
    res = restoration.denoise_tv_chambolle(x.astype(np.uint8), weight=0.1)
    assert_(res.dtype == np.float)
    assert_(res.std() * 255 < x.std())


def test_denoise_tv_chambolle_4d():
    """ TV denoising for a 4D input."""
    im = 255 * np.random.rand(8, 8, 8, 8)
    res = restoration.denoise_tv_chambolle(im.astype(np.uint8), weight=0.1)
    assert_(res.dtype == np.float)
    assert_(res.std() * 255 < im.std())


def test_denoise_tv_chambolle_weighting():
    # make sure a specified weight gives consistent results regardless of
    # the number of input image dimensions
    rstate = np.random.RandomState(1234)
    img2d = astro_gray.copy()
    img2d += 0.15 * rstate.standard_normal(img2d.shape)
    img2d = np.clip(img2d, 0, 1)

    # generate 4D image by tiling
    img4d = np.tile(img2d[..., None, None], (1, 1, 2, 2))

    w = 0.2
    denoised_2d = restoration.denoise_tv_chambolle(img2d, weight=w)
    denoised_4d = restoration.denoise_tv_chambolle(img4d, weight=w)
    assert_(structural_similarity(denoised_2d,
                                  denoised_4d[:, :, 0, 0]) > 0.99)


def test_denoise_tv_bregman_2d():
    img = checkerboard_gray.copy()
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1)

    out1 = restoration.denoise_tv_bregman(img, weight=10)
    out2 = restoration.denoise_tv_bregman(img, weight=5)

    # make sure noise is reduced in the checkerboard cells
    assert_(img[30:45, 5:15].std() > out1[30:45, 5:15].std())
    assert_(out1[30:45, 5:15].std() > out2[30:45, 5:15].std())


def test_denoise_tv_bregman_float_result_range():
    # astronaut image
    img = astro_gray.copy()
    int_astro = np.multiply(img, 255).astype(np.uint8)
    assert_(np.max(int_astro) > 1)
    denoised_int_astro = restoration.denoise_tv_bregman(int_astro, weight=60.0)
    # test if the value range of output float data is within [0.0:1.0]
    assert_(denoised_int_astro.dtype == np.float)
    assert_(np.max(denoised_int_astro) <= 1.0)
    assert_(np.min(denoised_int_astro) >= 0.0)


def test_denoise_tv_bregman_3d():
    img = checkerboard.copy()
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1)

    out1 = restoration.denoise_tv_bregman(img, weight=10)
    out2 = restoration.denoise_tv_bregman(img, weight=5)

    # make sure noise is reduced in the checkerboard cells
    assert_(img[30:45, 5:15].std() > out1[30:45, 5:15].std())
    assert_(out1[30:45, 5:15].std() > out2[30:45, 5:15].std())


def test_denoise_tv_bregman_3d_multichannel():
    img_astro = astro.copy()
    denoised0 = restoration.denoise_tv_bregman(img_astro[..., 0], weight=60.0)
    denoised = restoration.denoise_tv_bregman(img_astro, weight=60.0,
                                              multichannel=True)

    assert_equal(denoised0, denoised[..., 0])


def test_denoise_tv_bregman_multichannel():
    img = checkerboard_gray.copy()[:50, :50]
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1)

    out1 = restoration.denoise_tv_bregman(img, weight=60.0)
    out2 = restoration.denoise_tv_bregman(img, weight=60.0, multichannel=True)

    assert_equal(out1, out2)


def test_denoise_bilateral_2d():
    img = checkerboard_gray.copy()[:50, :50]
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1)

    out1 = restoration.denoise_bilateral(img, sigma_color=0.1,
                                         sigma_spatial=10, multichannel=False)
    out2 = restoration.denoise_bilateral(img, sigma_color=0.2,
                                         sigma_spatial=20, multichannel=False)

    # make sure noise is reduced in the checkerboard cells
    assert_(img[30:45, 5:15].std() > out1[30:45, 5:15].std())
    assert_(out1[30:45, 5:15].std() > out2[30:45, 5:15].std())


def test_denoise_bilateral_pad():
    """This test checks if the bilateral filter is returning an image
    correctly padded."""
    img = img_as_float(data.chelsea())[100:200, 100:200]
    img_bil = restoration.denoise_bilateral(img, sigma_color=0.1,
                                            sigma_spatial=10,
                                            multichannel=True)
    condition_padding = np.count_nonzero(np.isclose(img_bil,
                                                    0,
                                                    atol=0.001))
    assert_equal(condition_padding, 0)


@pytest.mark.parametrize('dtype', [np.float32, np.double])
def test_denoise_bilateral_types(dtype):
    img = checkerboard_gray.copy()[:50, :50]
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1).astype(dtype)

    # check that we can process multiple float types
    out = restoration.denoise_bilateral(img, sigma_color=0.1,
                                        sigma_spatial=10, multichannel=False)


@pytest.mark.parametrize('dtype', [np.float32, np.double])
def test_denoise_bregman_types(dtype):
    img = checkerboard_gray.copy()[:50, :50]
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1).astype(dtype)

    # check that we can process multiple float types
    out = restoration.denoise_tv_bregman(img, weight=5)


def test_denoise_bilateral_zeros():
    img = np.zeros((10, 10))
    assert_equal(img, restoration.denoise_bilateral(img, multichannel=False))


def test_denoise_bilateral_constant():
    img = np.ones((10, 10)) * 5
    assert_equal(img, restoration.denoise_bilateral(img, multichannel=False))


def test_denoise_bilateral_color():
    img = checkerboard.copy()[:50, :50]
    # add some random noise
    img += 0.5 * img.std() * np.random.rand(*img.shape)
    img = np.clip(img, 0, 1)

    out1 = restoration.denoise_bilateral(img, sigma_color=0.1,
                                         sigma_spatial=10, multichannel=True)
    out2 = restoration.denoise_bilateral(img, sigma_color=0.2,
                                         sigma_spatial=20, multichannel=True)

    # make sure noise is reduced in the checkerboard cells
    assert_(img[30:45, 5:15].std() > out1[30:45, 5:15].std())
    assert_(out1[30:45, 5:15].std() > out2[30:45, 5:15].std())


def test_denoise_bilateral_3d_grayscale():
    img = np.ones((50, 50, 3))
    with testing.raises(ValueError):
        restoration.denoise_bilateral(img, multichannel=False)


def test_denoise_bilateral_3d_multichannel():
    img = np.ones((50, 50, 50))
    with expected_warnings(["grayscale"]):
        result = restoration.denoise_bilateral(img, multichannel=True)

    assert_equal(result, img)


def test_denoise_bilateral_multidimensional():
    img = np.ones((10, 10, 10, 10))
    with testing.raises(ValueError):
        restoration.denoise_bilateral(img, multichannel=False)
    with testing.raises(ValueError):
        restoration.denoise_bilateral(img, multichannel=True)


def test_denoise_bilateral_nan():
    img = np.full((50, 50), np.NaN)
    # This is in fact an optional warning for our test suite.
    # Python 3.5 will not trigger a warning.
    with expected_warnings([r'invalid|\A\Z']):
        out = restoration.denoise_bilateral(img, multichannel=False)
    assert_equal(img, out)


@pytest.mark.parametrize('fast_mode', [False, True])
def test_denoise_nl_means_2d(fast_mode):
    img = np.zeros((40, 40))
    img[10:-10, 10:-10] = 1.
    sigma = 0.3
    img += sigma * np.random.randn(*img.shape)
    img_f32 = img.astype('float32')
    for s in [sigma, 0]:
        denoised = restoration.denoise_nl_means(img, 7, 5, 0.2,
                                                fast_mode=fast_mode,
                                                multichannel=False,
                                                sigma=s)
        # make sure noise is reduced
        assert_(img.std() > denoised.std())

        denoised_f32 = restoration.denoise_nl_means(img_f32, 7, 5, 0.2,
                                                    fast_mode=fast_mode,
                                                    multichannel=False,
                                                    sigma=s)
        # make sure noise is reduced
        assert_(img.std() > denoised_f32.std())

        # Sheck single precision result
        assert np.allclose(denoised_f32, denoised, atol=1e-2)


@pytest.mark.parametrize('fast_mode', [False, True])
@pytest.mark.parametrize('n_channels', [2, 3, 6])
@pytest.mark.parametrize('dtype', ['float64', 'float32'])
def test_denoise_nl_means_2d_multichannel(fast_mode, n_channels, dtype):
    # reduce image size because nl means is slow
    img = np.copy(astro[:50, :50])
    img = np.concatenate((img, ) * 2, )  # 6 channels
    img = img.astype(dtype)

    # add some random noise
    sigma = 0.1
    imgn = img + sigma * np.random.standard_normal(img.shape)
    imgn = np.clip(imgn, 0, 1)
    imgn = imgn.astype(dtype)

    for s in [sigma, 0]:
        psnr_noisy = peak_signal_noise_ratio(
            img[..., :n_channels], imgn[..., :n_channels])
        denoised = restoration.denoise_nl_means(imgn[..., :n_channels],
                                                3, 5, h=0.75 * sigma,
                                                fast_mode=fast_mode,
                                                multichannel=True,
                                                sigma=s)
        psnr_denoised = peak_signal_noise_ratio(
            denoised[..., :n_channels], img[..., :n_channels])

        # make sure noise is reduced
        assert_(psnr_denoised > psnr_noisy)


@pytest.mark.parametrize('fast_mode', [False, True])
@pytest.mark.parametrize('dtype', ['float64', 'float32'])
def test_denoise_nl_means_3d(fast_mode, dtype):
    img = np.zeros((12, 12, 8), dtype=dtype)
    img[5:-5, 5:-5, 2:-2] = 1.
    sigma = 0.3
    imgn = img + sigma * np.random.randn(*img.shape)
    imgn = imgn.astype(dtype)
    psnr_noisy = peak_signal_noise_ratio(img, imgn)
    for s in [sigma, 0]:
        denoised = restoration.denoise_nl_means(imgn, 3, 4, h=0.75 * sigma,
                                                fast_mode=fast_mode,
                                                multichannel=False, sigma=s)
        # make sure noise is reduced
        assert_(peak_signal_noise_ratio(img, denoised) > psnr_noisy)


@pytest.mark.parametrize('fast_mode', [False, True])
@pytest.mark.parametrize('dtype', ['float64', 'float32'])
def test_denoise_nl_means_multichannel(fast_mode, dtype):
    # for true 3D data, 3D denoising is better than denoising as 2D+channels
    img = np.zeros((13, 10, 8), dtype=dtype)
    img[6, 4:6, 2:-2] = 1.
    sigma = 0.3
    imgn = img + sigma * np.random.randn(*img.shape)
    imgn = imgn.astype(dtype)
    denoised_wrong_multichannel = restoration.denoise_nl_means(
        imgn, 3, 4, 0.6 * sigma, fast_mode=fast_mode, multichannel=True)
    denoised_ok_multichannel = restoration.denoise_nl_means(
        imgn, 3, 4, 0.6 * sigma, fast_mode=fast_mode, multichannel=False)
    psnr_wrong = peak_signal_noise_ratio(img, denoised_wrong_multichannel)
    psnr_ok = peak_signal_noise_ratio(img, denoised_ok_multichannel)
    assert_(psnr_ok > psnr_wrong)


def test_denoise_nl_means_wrong_dimension():
    img = np.zeros((5, 5, 5, 5))
    with testing.raises(NotImplementedError):
        restoration.denoise_nl_means(img, multichannel=True)


@pytest.mark.parametrize('fast_mode', [False, True])
@pytest.mark.parametrize('dtype', ['float64', 'float32'])
def test_no_denoising_for_small_h(fast_mode, dtype):
    img = np.zeros((40, 40))
    img[10:-10, 10:-10] = 1.
    img += 0.3*np.random.randn(*img.shape)
    img = img.astype(dtype)
    # very small h should result in no averaging with other patches
    denoised = restoration.denoise_nl_means(img, 7, 5, 0.01,
                                            fast_mode=fast_mode,
                                            multichannel=False)
    assert_(np.allclose(denoised, img))
    denoised = restoration.denoise_nl_means(img, 7, 5, 0.01,
                                            fast_mode=fast_mode,
                                            multichannel=False)
    assert_(np.allclose(denoised, img))


@pytest.mark.parametrize('fast_mode', [False, True])
def test_denoise_nl_means_2d_dtype(fast_mode):
    img = np.zeros((40, 40), dtype=int)
    img_f32 = img.astype('float32')
    img_f64 = img.astype('float64')

    with expected_warnings(['Image dtype is not float']):
        assert restoration.denoise_nl_means(
            img, fast_mode=fast_mode).dtype == 'float64'

    assert restoration.denoise_nl_means(
        img_f32, fast_mode=fast_mode).dtype == img_f32.dtype

    assert restoration.denoise_nl_means(
        img_f64, fast_mode=fast_mode).dtype == img_f64.dtype


@pytest.mark.parametrize('fast_mode', [False, True])
def test_denoise_nl_means_3d_dtype(fast_mode):
    img = np.zeros((12, 12, 8), dtype=int)
    img_f32 = img.astype('float32')
    img_f64 = img.astype('float64')

    with expected_warnings(['Image dtype is not float']):
        assert restoration.denoise_nl_means(
            img, patch_distance=2, fast_mode=fast_mode).dtype == 'float64'

    assert restoration.denoise_nl_means(
        img_f32, patch_distance=2, fast_mode=fast_mode).dtype == img_f32.dtype

    assert restoration.denoise_nl_means(
        img_f64, patch_distance=2, fast_mode=fast_mode).dtype == img_f64.dtype


@pytest.mark.parametrize(
    'img, multichannel, convert2ycbcr',
    [(astro_gray, False, False),
     (astro_gray_odd, False, False),
     (astro_odd, True, False),
     (astro_odd, True, True)]
)
def test_wavelet_denoising(img, multichannel, convert2ycbcr):
    rstate = np.random.RandomState(1234)
    sigma = 0.1
    noisy = img + sigma * rstate.randn(*(img.shape))
    noisy = np.clip(noisy, 0, 1)

    # Verify that SNR is improved when true sigma is used
    denoised = restoration.denoise_wavelet(noisy, sigma=sigma,
                                           multichannel=multichannel,
                                           convert2ycbcr=convert2ycbcr,
                                           rescale_sigma=True)
    psnr_noisy = peak_signal_noise_ratio(img, noisy)
    psnr_denoised = peak_signal_noise_ratio(img, denoised)
    assert_(psnr_denoised > psnr_noisy)

    # Verify that SNR is improved with internally estimated sigma
    denoised = restoration.denoise_wavelet(noisy,
                                           multichannel=multichannel,
                                           convert2ycbcr=convert2ycbcr,
                                           rescale_sigma=True)
    psnr_noisy = peak_signal_noise_ratio(img, noisy)
    psnr_denoised = peak_signal_noise_ratio(img, denoised)
    assert_(psnr_denoised > psnr_noisy)

    # SNR is improved less with 1 wavelet level than with the default.
    denoised_1 = restoration.denoise_wavelet(noisy,
                                             multichannel=multichannel,
                                             wavelet_levels=1,
                                             convert2ycbcr=convert2ycbcr,
                                             rescale_sigma=True)
    psnr_denoised_1 = peak_signal_noise_ratio(img, denoised_1)
    assert_(psnr_denoised > psnr_denoised_1)
    assert_(psnr_denoised_1 > psnr_noisy)

    # Test changing noise_std (higher threshold, so less energy in signal)
    res1 = restoration.denoise_wavelet(noisy, sigma=2 * sigma,
                                       multichannel=multichannel,
                                       rescale_sigma=True)
    res2 = restoration.denoise_wavelet(noisy, sigma=sigma,
                                       multichannel=multichannel,
                                       rescale_sigma=True)
    assert_(np.sum(res1**2) <= np.sum(res2**2))


@pytest.mark.parametrize(
    'case, dtype, convert2ycbcr, estimate_sigma',
    itertools.product(
        ['1d', '2d multichannel'],
        [np.float16, np.float32, np.float64, np.int16, np.uint8],
        [True, False],
        [True, False])
)
def test_wavelet_denoising_scaling(case, dtype, convert2ycbcr,
                                   estimate_sigma):
    """Test cases for images without prescaling via img_as_float."""
    rstate = np.random.RandomState(1234)

    if case == '1d':
        # 1D single-channel in range [0, 255]
        x = np.linspace(0, 255, 1024)
    elif case == '2d multichannel':
        # 2D multichannel in range [0, 255]
        x = data.astronaut()[:64, :64]
    x = x.astype(dtype)

    # add noise and clip to original signal range
    sigma = 25.
    noisy = x + sigma * rstate.randn(*x.shape)
    noisy = np.clip(noisy, x.min(), x.max())
    noisy = noisy.astype(x.dtype)

    multichannel = x.shape[-1] == 3

    if estimate_sigma:
        sigma_est = restoration.estimate_sigma(noisy,
                                               multichannel=multichannel)
    else:
        sigma_est = None

    if convert2ycbcr and not multichannel:
        # YCbCr requires multichannel == True
        with testing.raises(ValueError):
            denoised = restoration.denoise_wavelet(noisy,
                                                   sigma=sigma_est,
                                                   wavelet='sym4',
                                                   multichannel=multichannel,
                                                   convert2ycbcr=convert2ycbcr,
                                                   rescale_sigma=True)
        return

    denoised = restoration.denoise_wavelet(noisy, sigma=sigma_est,
                                           wavelet='sym4',
                                           multichannel=multichannel,
                                           convert2ycbcr=convert2ycbcr,
                                           rescale_sigma=True)

    data_range = x.max() - x.min()
    psnr_noisy = peak_signal_noise_ratio(x, noisy, data_range=data_range)
    clipped = np.dtype(dtype).kind != 'f'
    if not clipped:
        psnr_denoised = peak_signal_noise_ratio(x, denoised,
                                                data_range=data_range)

        # output's max value is not substantially smaller than x's
        assert_(denoised.max() > 0.9 * x.max())
    else:
        # have to compare to x_as_float in integer input cases
        x_as_float = img_as_float(x)
        f_data_range = x_as_float.max() - x_as_float.min()
        psnr_denoised = peak_signal_noise_ratio(x_as_float, denoised,
                                                data_range=f_data_range)

        # output has been clipped to expected range
        assert_(denoised.max() <= 1.0)
        if np.dtype(dtype).kind == 'u':
            assert_(denoised.min() >= 0)
        else:
            assert_(denoised.min() >= -1)

    assert_(psnr_denoised > psnr_noisy)


def test_wavelet_threshold():
    rstate = np.random.RandomState(1234)

    img = astro_gray
    sigma = 0.1
    noisy = img + sigma * rstate.randn(*(img.shape))
    noisy = np.clip(noisy, 0, 1)

    # employ a single, user-specified threshold instead of BayesShrink sigmas
    denoised = _wavelet_threshold(noisy, wavelet='db1', method=None,
                                  threshold=sigma)
    psnr_noisy = peak_signal_noise_ratio(img, noisy)
    psnr_denoised = peak_signal_noise_ratio(img, denoised)
    assert_(psnr_denoised > psnr_noisy)

    # either method or threshold must be defined
    with testing.raises(ValueError):
        _wavelet_threshold(noisy, wavelet='db1', method=None, threshold=None)

    # warns if a threshold is provided in a case where it would be ignored
    with expected_warnings(["Thresholding method ",]):
        _wavelet_threshold(noisy, wavelet='db1', method='BayesShrink',
                           threshold=sigma)


@pytest.mark.parametrize(
    'rescale_sigma, method, ndim',
    itertools.product(
        [True, False],
        ['VisuShrink', 'BayesShrink'],
        range(1, 5)
    )
)
def test_wavelet_denoising_nd(rescale_sigma, method, ndim):
    rstate = np.random.RandomState(1234)
    # Generate a very simple test image
    if ndim < 3:
        img = 0.2*np.ones((128, )*ndim)
    else:
        img = 0.2*np.ones((16, )*ndim)
    img[(slice(5, 13), ) * ndim] = 0.8

    sigma = 0.1
    noisy = img + sigma * rstate.randn(*(img.shape))
    noisy = np.clip(noisy, 0, 1)

    # Mark H. 2018.08:
    #   The issue arises because when ndim in [1, 2]
    #   ``waverecn`` calls ``_match_coeff_dims``
    #   Which includes a numpy 1.15 deprecation.
    #   for larger number of dimensions _match_coeff_dims isn't called
    #   for some reason.
    # Verify that SNR is improved with internally estimated sigma
    denoised = restoration.denoise_wavelet(
            noisy, method=method,
            rescale_sigma=rescale_sigma)
    psnr_noisy = peak_signal_noise_ratio(img, noisy)
    psnr_denoised = peak_signal_noise_ratio(img, denoised)
    assert_(psnr_denoised > psnr_noisy)


def test_wavelet_invalid_method():
    with testing.raises(ValueError):
        restoration.denoise_wavelet(np.ones(16), method='Unimplemented',
                                    rescale_sigma=True)


def test_wavelet_rescale_sigma_deprecation():
    # No specifying rescale_sigma results in a DeprecationWarning
    assert_warns(FutureWarning, restoration.denoise_wavelet, np.ones(16))


@pytest.mark.parametrize('rescale_sigma', [True, False])
def test_wavelet_denoising_levels(rescale_sigma):
    rstate = np.random.RandomState(1234)
    ndim = 2
    N = 256
    wavelet = 'db1'
    # Generate a very simple test image
    img = 0.2*np.ones((N, )*ndim)
    img[(slice(5, 13), ) * ndim] = 0.8

    sigma = 0.1
    noisy = img + sigma * rstate.randn(*(img.shape))
    noisy = np.clip(noisy, 0, 1)

    denoised = restoration.denoise_wavelet(noisy, wavelet=wavelet,
                                           rescale_sigma=rescale_sigma)
    denoised_1 = restoration.denoise_wavelet(noisy, wavelet=wavelet,
                                             wavelet_levels=1,
                                             rescale_sigma=rescale_sigma)
    psnr_noisy = peak_signal_noise_ratio(img, noisy)
    psnr_denoised = peak_signal_noise_ratio(img, denoised)
    psnr_denoised_1 = peak_signal_noise_ratio(img, denoised_1)

    # multi-level case should outperform single level case
    assert_(psnr_denoised > psnr_denoised_1 > psnr_noisy)

    # invalid number of wavelet levels results in a ValueError or UserWarning
    max_level = pywt.dwt_max_level(np.min(img.shape),
                                   pywt.Wavelet(wavelet).dec_len)
    # exceeding max_level raises a UserWarning in PyWavelets >= 1.0.0
    with expected_warnings([
            'all coefficients will experience boundary effects']):
        restoration.denoise_wavelet(
            noisy, wavelet=wavelet, wavelet_levels=max_level + 1,
            rescale_sigma=rescale_sigma)

    with testing.raises(ValueError):
        restoration.denoise_wavelet(
                noisy,
                wavelet=wavelet, wavelet_levels=-1,
                rescale_sigma=rescale_sigma)


def test_estimate_sigma_gray():
    rstate = np.random.RandomState(1234)
    # astronaut image
    img = astro_gray.copy()
    sigma = 0.1
    # add noise to astronaut
    img += sigma * rstate.standard_normal(img.shape)

    sigma_est = restoration.estimate_sigma(img, multichannel=False)
    assert_almost_equal(sigma, sigma_est, decimal=2)


def test_estimate_sigma_masked_image():
    # Verify computation on an image with a large, noise-free border.
    # (zero regions will be masked out by _sigma_est_dwt to avoid returning
    #  sigma = 0)
    rstate = np.random.RandomState(1234)
    # uniform image
    img = np.zeros((128, 128))
    center_roi = (slice(32, 96), slice(32, 96))
    img[center_roi] = 0.8
    sigma = 0.1

    img[center_roi] = sigma * rstate.standard_normal(img[center_roi].shape)

    sigma_est = restoration.estimate_sigma(img, multichannel=False)
    assert_almost_equal(sigma, sigma_est, decimal=1)


def test_estimate_sigma_color():
    rstate = np.random.RandomState(1234)
    # astronaut image
    img = astro.copy()
    sigma = 0.1
    # add noise to astronaut
    img += sigma * rstate.standard_normal(img.shape)

    sigma_est = restoration.estimate_sigma(img, multichannel=True,
                                           average_sigmas=True)
    assert_almost_equal(sigma, sigma_est, decimal=2)

    sigma_list = restoration.estimate_sigma(img, multichannel=True,
                                            average_sigmas=False)
    assert_equal(len(sigma_list), img.shape[-1])
    assert_almost_equal(sigma_list[0], sigma_est, decimal=2)

    # default multichannel=False should raise a warning about last axis size
    assert_warns(UserWarning, restoration.estimate_sigma, img)


@pytest.mark.parametrize('rescale_sigma', [True, False])
def test_wavelet_denoising_args(rescale_sigma):
    """
    Some of the functions inside wavelet denoising throw an error the wrong
    arguments are passed. This protects against that and verifies that all
    arguments can be passed.
    """
    img = astro
    noisy = img.copy() + 0.1 * np.random.randn(*(img.shape))

    for convert2ycbcr in [True, False]:
        for multichannel in [True, False]:
            if convert2ycbcr and not multichannel:
                with testing.raises(ValueError):
                    restoration.denoise_wavelet(noisy,
                                                convert2ycbcr=convert2ycbcr,
                                                multichannel=multichannel,
                                                rescale_sigma=rescale_sigma)
                continue
            for sigma in [0.1, [0.1, 0.1, 0.1], None]:
                if (not multichannel and not convert2ycbcr) or \
                        (isinstance(sigma, list) and not multichannel):
                    continue
                restoration.denoise_wavelet(noisy, sigma=sigma,
                                            convert2ycbcr=convert2ycbcr,
                                            multichannel=multichannel,
                                            rescale_sigma=rescale_sigma)


@pytest.mark.parametrize('rescale_sigma', [True, False])
def test_denoise_wavelet_biorthogonal(rescale_sigma):
    """Biorthogonal wavelets should raise a warning during thresholding."""
    img = astro_gray
    assert_warns(UserWarning, restoration.denoise_wavelet, img,
                 wavelet='bior2.2', multichannel=False,
                 rescale_sigma=rescale_sigma)


@pytest.mark.parametrize('rescale_sigma', [True, False])
def test_cycle_spinning_multichannel(rescale_sigma):
    sigma = 0.1
    rstate = np.random.RandomState(1234)

    for multichannel in True, False:
        if multichannel:
            img = astro
            # can either omit or be 0 along the channels axis
            valid_shifts = [1, (0, 1), (1, 0), (1, 1), (1, 1, 0)]
            # can either omit or be 1 on channels axis.
            valid_steps = [1, 2, (1, 2), (1, 2, 1)]
            # too few or too many shifts or non-zero shift on channels
            invalid_shifts = [(1, 1, 2), (1, ), (1, 1, 0, 1)]
            # too few or too many shifts or any shifts <= 0
            invalid_steps = [(1, ), (1, 1, 1, 1), (0, 1), (-1, -1)]
        else:
            img = astro_gray
            valid_shifts = [1, (0, 1), (1, 0), (1, 1)]
            valid_steps = [1, 2, (1, 2)]
            invalid_shifts = [(1, 1, 2), (1, )]
            invalid_steps = [(1, ), (1, 1, 1), (0, 1), (-1, -1)]

        noisy = img.copy() + 0.1 * rstate.randn(*(img.shape))

        denoise_func = restoration.denoise_wavelet
        func_kw = dict(sigma=sigma, multichannel=multichannel,
                       rescale_sigma=rescale_sigma)

        # max_shifts=0 is equivalent to just calling denoise_func
        with expected_warnings([DASK_NOT_INSTALLED_WARNING]):
            dn_cc = restoration.cycle_spin(noisy, denoise_func, max_shifts=0,
                                           func_kw=func_kw,
                                           multichannel=multichannel)
            dn = denoise_func(noisy, **func_kw)
        assert_equal(dn, dn_cc)

        # denoising with cycle spinning will give better PSNR than without
        for max_shifts in valid_shifts:
            with expected_warnings([DASK_NOT_INSTALLED_WARNING]):
                dn_cc = restoration.cycle_spin(noisy, denoise_func,
                                               max_shifts=max_shifts,
                                               func_kw=func_kw,
                                               multichannel=multichannel)
            psnr = peak_signal_noise_ratio(img, dn)
            psnr_cc = peak_signal_noise_ratio(img, dn_cc)
            assert_(psnr_cc > psnr)

        for shift_steps in valid_steps:
            with expected_warnings([DASK_NOT_INSTALLED_WARNING]):
                dn_cc = restoration.cycle_spin(noisy, denoise_func,
                                               max_shifts=2,
                                               shift_steps=shift_steps,
                                               func_kw=func_kw,
                                               multichannel=multichannel)
            psnr = peak_signal_noise_ratio(img, dn)
            psnr_cc = peak_signal_noise_ratio(img, dn_cc)
            assert_(psnr_cc > psnr)

        for max_shifts in invalid_shifts:
            with testing.raises(ValueError):
                dn_cc = restoration.cycle_spin(noisy, denoise_func,
                                               max_shifts=max_shifts,
                                               func_kw=func_kw,
                                               multichannel=multichannel)
        for shift_steps in invalid_steps:
            with testing.raises(ValueError):
                dn_cc = restoration.cycle_spin(noisy, denoise_func,
                                               max_shifts=2,
                                               shift_steps=shift_steps,
                                               func_kw=func_kw,
                                               multichannel=multichannel)


def test_cycle_spinning_num_workers():
    img = astro_gray
    sigma = 0.1
    rstate = np.random.RandomState(1234)
    noisy = img.copy() + 0.1 * rstate.randn(*(img.shape))

    denoise_func = restoration.denoise_wavelet
    func_kw = dict(sigma=sigma, multichannel=True, rescale_sigma=True)

    # same results are expected whether using 1 worker or multiple workers
    dn_cc1 = restoration.cycle_spin(noisy, denoise_func, max_shifts=1,
                                    func_kw=func_kw, multichannel=False,
                                    num_workers=1)
    with expected_warnings([DASK_NOT_INSTALLED_WARNING,]):
        dn_cc2 = restoration.cycle_spin(noisy, denoise_func, max_shifts=1,
                                        func_kw=func_kw, multichannel=False,
                                        num_workers=4)
        dn_cc3 = restoration.cycle_spin(noisy, denoise_func, max_shifts=1,
                                        func_kw=func_kw, multichannel=False,
                                        num_workers=None)
    assert_almost_equal(dn_cc1, dn_cc2)
    assert_almost_equal(dn_cc1, dn_cc3)


if __name__ == "__main__":
    testing.run_module_suite()
