# etc/Makeconf.  Generated from Makeconf.in by configure.
#
# ${R_HOME}/etc/Makeconf
#
# R was configured using the following call
# (not including env. vars and site configuration)
# configure  '--prefix=/opt/anaconda1anaconda2anaconda3' '--enable-shared' '--enable-R-shlib' '--enable-BLAS-shlib' '--disable-prebuilt-html' '--enable-memory-profiling' '--with-tk-config=/opt/anaconda1anaconda2anaconda3/lib/tkConfig.sh' '--with-tcl-config=/opt/anaconda1anaconda2anaconda3/lib/tclConfig.sh' '--with-x' '--with-pic' '--with-cairo' '--with-curses' '--with-readline' '--with-recommended-packages=no' 'LIBnn=lib' 'JAVA_HOME=/usr/lib/jvm/java/jre' 'PKG_CONFIG_PATH=/opt/anaconda1anaconda2anaconda3/lib/pkgconfig' 'CFLAGS=-I/opt/anaconda1anaconda2anaconda3/include' 'LDFLAGS= -L/opt/anaconda1anaconda2anaconda3/lib -lgfortran' 'CPPFLAGS=-I/opt/anaconda1anaconda2anaconda3/include' 'FFLAGS=-I/opt/anaconda1anaconda2anaconda3/include -L/opt/anaconda1anaconda2anaconda3/lib' 'CXXFLAGS=-I/opt/anaconda1anaconda2anaconda3/include' 'OBJCFLAGS=-I/opt/anaconda1anaconda2anaconda3/include' 'FCFLAGS=-I/opt/anaconda1anaconda2anaconda3/include -L/opt/anaconda1anaconda2anaconda3/lib'

## This fails if it contains spaces, or if it is quoted
include $(R_SHARE_DIR)/make/vars.mk

AR = ar
BLAS_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRblas
C_VISIBILITY = -fvisibility=hidden
CC = gcc -std=gnu99
CFLAGS = -I/opt/anaconda1anaconda2anaconda3/include $(LTO)
CPICFLAGS = -fpic
CPPFLAGS = -I/opt/anaconda1anaconda2anaconda3/include
CXX = g++
CXXCPP = $(CXX) -E
CXXFLAGS = -I/opt/anaconda1anaconda2anaconda3/include $(LTO)
CXXPICFLAGS = -fpic
CXX1X = g++
CXX1XFLAGS = -I/opt/anaconda1anaconda2anaconda3/include
CXX1XPICFLAGS = -fpic
CXX1XSTD =  -std=c++11
DYLIB_EXT = .so
DYLIB_LD = $(CC)
DYLIB_LDFLAGS = -shared -fopenmp# $(CFLAGS) $(CPICFLAGS)
DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS)
ECHO = echo
ECHO_C = 
ECHO_N = -n
ECHO_T = 
## NB, set FC before F77 as on Solaris make, setting FC sets F77
FC = gfortran
FCFLAGS = -I/opt/anaconda1anaconda2anaconda3/include -L/opt/anaconda1anaconda2anaconda3/lib $(LTO)
## additional libs needed when linking with $(FC), e.g. on Solaris
FCLIBS = 
F77 = gfortran
F77_VISIBILITY = -fvisibility=hidden
FFLAGS = -I/opt/anaconda1anaconda2anaconda3/include -L/opt/anaconda1anaconda2anaconda3/lib $(LTO)
FLIBS =  -lgfortran -lm -lquadmath
FCPICFLAGS = -fpic
FPICFLAGS = -fpic
FOUNDATION_CPPFLAGS = 
FOUNDATION_LIBS = 
JAR = /usr/lib/jvm/java/jre/../bin/jar
JAVA = /usr/lib/jvm/java/jre/bin/java
JAVAC = /usr/lib/jvm/java/jre/../bin/javac
JAVAH = /usr/lib/jvm/java/jre/../bin/javah
## JAVA_HOME might be used in the next three.  
## They are for packages 'JavaGD' and 'rJava'
JAVA_HOME = /usr/lib/jvm/java/jre
JAVA_CPPFLAGS = -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux
JAVA_LIBS = -L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.111/jre/lib/i386/client -ljvm
JAVA_LD_LIBRARY_PATH = /usr/lib/jvm/java/jre/lib/amd64/server
LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack
## we only need this is if it is external, as otherwise link to R
LIBINTL= 
LIBM = -lm
LIBR0 = -L$(R_HOME)/lib$(R_ARCH)
LIBR1 = -lR
LIBR = -L$(R_HOME)/lib$(R_ARCH) -lR
LIBS =  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n
## needed by R CMD config
LIBnn = lib
LIBTOOL = $(SHELL) "$(R_HOME)/bin/libtool"
LDFLAGS =  -L/opt/anaconda1anaconda2anaconda3/lib -lgfortran
LTO = 
## needed to build applications linking to static libR
MAIN_LD = $(CC)
MAIN_LDFLAGS = -Wl,--export-dynamic -fopenmp
RPATH_LDFLAGS = -Wl,-rpath,$(abs_top_builddir)/lib -Wl,-rpath,/opt/anaconda1anaconda2anaconda3/lib
MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS) $(RPATH_LDFLAGS)
MKINSTALLDIRS = $(R_HOME)/bin/mkinstalldirs
OBJC = gcc
OBJCFLAGS = -I/opt/anaconda1anaconda2anaconda3/include -fobjc-exceptions $(LTO)
OBJC_LIBS =  
OBJCXX = 
R_ARCH = 
RANLIB = ranlib
SAFE_FFLAGS = -I/opt/anaconda1anaconda2anaconda3/include -L/opt/anaconda1anaconda2anaconda3/lib -ffloat-store
SED = /bin/sed
SHELL = /bin/sh
SHLIB_CFLAGS = 
SHLIB_CXXFLAGS = 
SHLIB_CXXLD = $(CXX)
SHLIB_CXXLDFLAGS = -shared
SHLIB_CXX1XLD = $(CXX1X) $(CXX1XSTD)
SHLIB_CXX1XLDFLAGS = -shared
SHLIB_EXT = .so
SHLIB_FCLD = $(FC)
SHLIB_FCLDFLAGS = -shared
SHLIB_FFLAGS = 
SHLIB_LD = $(CC)
SHLIB_LDFLAGS = -shared# $(CFLAGS) $(CPICFLAGS)
SHLIB_LIBADD = 
## We want to ensure libR is picked up from $(R_HOME)/lib
## before e.g. /usr/local/lib if a version is already installed.
SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LIBR0) $(LDFLAGS)
SHLIB_OPENMP_CFLAGS = -fopenmp
SHLIB_OPENMP_CXXFLAGS = -fopenmp
SHLIB_OPENMP_FCFLAGS = -fopenmp
SHLIB_OPENMP_FFLAGS = -fopenmp
STRIP_LIBS = strip --strip-unneeded
STRIP_STATIC_LIBS = strip --strip-debug
TCLTK_CPPFLAGS = -I/opt/anaconda1anaconda2anaconda3/include -I/opt/anaconda1anaconda2anaconda3/include 
TCLTK_LIBS = -L/opt/anaconda1anaconda2anaconda3/lib -ltcl8.5 -L/opt/anaconda1anaconda2anaconda3/lib -ltk8.5 -lX11
YACC = bison -y

## for linking to libR.a
STATIC_LIBR = # -Wl,--whole-archive "$(R_HOME)/lib$(R_ARCH)/libR.a" -Wl,--no-whole-archive $(BLAS_LIBS) $(FLIBS)  $(LIBINTL) -lreadline -lncursesw  $(LIBS)

R_XTRA_CFLAGS = 
R_XTRA_CPPFLAGS =  -I$(R_INCLUDE_DIR) -DNDEBUG
R_XTRA_CXXFLAGS = 
R_XTRA_FFLAGS = 

ALL_CFLAGS = $(R_XTRA_CFLAGS) $(PKG_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(PKG_CPPFLAGS) $(CPPFLAGS) $(CLINK_CPPFLAGS)
ALL_CXXFLAGS = $(R_XTRA_CXXFLAGS) $(PKG_CXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(CXXFLAGS)
ALL_OBJCFLAGS = $(PKG_OBJCFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(OBJCFLAGS)
ALL_OBJCXXFLAGS = $(PKG_OBJCXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(OBJCXXFLAGS)
ALL_FFLAGS = $(R_XTRA_FFLAGS) $(PKG_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
## LIBR here as a couple of packages use this without SHLIB_LINK
ALL_LIBS = $(PKG_LIBS) $(SHLIB_LIBADD) $(LIBR)# $(LIBINTL)

.SUFFIXES:
.SUFFIXES: .c .cc .cpp .d .f .f90 .f95 .m .mm .M .o

.c.o:
	$(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -c $< -o $@
.c.d:
	@echo "making $@ from $<"
	@$(CC) -MM $(ALL_CPPFLAGS) $< > $@
.cc.o:
	$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cpp.o:
	$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cc.d:
	@echo "making $@ from $<"
	@$(CXX) -M $(ALL_CPPFLAGS) $< > $@
.cpp.d:
	@echo "making $@ from $<"
	@$(CXX) -M $(ALL_CPPFLAGS) $< > $@
.m.o:
	$(OBJC) $(ALL_CPPFLAGS) $(ALL_OBJCFLAGS) -c $< -o $@
.m.d:
	@echo "making $@ from $<"
	@gcc -MM $(ALL_CPPFLAGS) $< > $@
.mm.o:
	$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.M.o:
	$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.f.o:
	$(F77) $(ALL_FFLAGS) -c $< -o $@
.f95.o:
	$(FC) $(PKG_FCFLAGS) $(FCPICFLAGS) $(FCFLAGS) -c  $< -o $@
.f90.o:
	$(FC) $(PKG_FCFLAGS) $(FCPICFLAGS) $(FCFLAGS) -c  $< -o $@
