# Activated Region Fitting, fMRI data analysis (3D).

## Documentation for package ‘arf3DS4’ version 2.5-10

- DESCRIPTION file.

## Help Pages

A B C D E F G L M N O P R S V W misc

arf3DS4-package | Activated Region Fitting fMRI data analysis

## -- A --

arf3DS4 | Activated Region Fitting fMRI data analysis
arfcorrelation-class | Class "arfcorrelation"
arfversion | Check the version of ARF objects.

## -- B --

BIC | Bayesian Information Criterion

## -- C --

checkSolution | Check the integrity of an ARF model
clearWarnings | Clear warnings of a model object.
createAllAverages | Create Averages of runs for all conditions.
createAverages | Create averages of runs for a condition.
createRegs | Create registration directories for runs of an ARF condition.

## -- D --

data-class | arf3DS4 "data" class
determineStartRect | Calculate starting values for an ARF model
determineStartRectSimple | Calculate starting values for an ARF model
differenceCor | Calculate if correlations differ.

## -- E --

euclidDist | Calculate Euclidian distances of all regions in a model.
experiment-class | arf3DS4 "experiment" class

## -- F --

fitConnectivity | Estimate connectivity of an ARF model
fitModel | Fit an ARF model.
fitModelOptim | Fit an ARF model.
fitRange | Fit a range of models.
fitSimpleModelOptim | Fit an ARF model.
fmri.data-class | arf3DS4 "fmri.data" class
fmri2array | Convert fMRI data to an array
functional-class | arf3DS4 "functional" class

## -- G --

getAtlasLabels | Find anatomical atlas labels.
getExp | Access experiment variables.
getModelAtlas | Get Atlas Labels for an ARF model.

## -- L --

loadData | Load an arf3DS4 "data" object.
loadExp | Load an arf3DS4 experiment
loadFunc | Load functional data for a single run of a condition.
loadModel | Load an ARF model
loadOptions | Save/load ARF Options
loadRda | Load an .Rda file into a specified object.
loadReg | Load a registration object.
loadStart | Save/load ARF starting values

## -- M --

makeDerivs | Calculate analytical first-order derivatives of parameters in an ARF model.
makeExample | Activated Region Fitting Example Dataset
makeExpDirs | Make Experiment directories.
makeLowResStruct | Make low resolution structural image from high resolution T1 image.
makeLowResStructAvg | Make low resolution structural image from high resolution T1 image.
makeROImask | Mask an fMRI image
makeSingleTrialEvents | Estimate single-trial fMRI activity.
mcpCorrect | Calculate Multiple Comparison Corrections
minBIC | Calculate BIC values for multiple ARF models.
mnames-class | arf3DS4 "mnames" class
model-class | arf3DS4 "model" class

## -- N --

newModel | Create a new ARF model
nifti.fileinfo-class | arf3DS4 "nifti.fileinfo" class
nifti.header-class | arf3DS4 "nifti.header" class

## -- O --

options-class | arf3DS4 "options" class

## -- P --

plot-method | arf3DS4 "fmri.data" class
plot-method | arf3DS4 "model" class
processModel | Process an ARF model.
processSeed | Process a model using a seed number of regions
pruneModel | Prune a model based on invalid gradients and bounded parameters.

## -- R --

readData | read in a NIFTI/ANALYZE file.
readDerivs | Read (binary) derivative file
registration-class | arf3DS4 "registration" class
RMSEA | Calculate Root Mean Square Error.
roiConnectivity | calculate Connectivity with spatial averaging

## -- S --

saveFunc | Save functional object.
saveModel | Save a model object
saveModelBin | Save ARF model estimates to a NIFTI file.
saveModelBinSimple | Save ARF model estimates to a NIFTI file.
saveOptions | Save/load ARF Options
saveReg | Save a registration object
saveStart | Save/load ARF starting values
sequence-class | arf3DS4 "sequence" class
setFuncTimings | Set the timings of the stimuli and link to raw time-series.
setIsoContour | Create isocontours
setRegFiles | Set registration files.
setRegParams | Set the registration parameters.
settings-class | arf3DS4 "settings" class
show-method | arf3DS4 "data" class
show-method | arf3DS4 "experiment" class
show-method | arf3DS4 "fmri.data" class
show-method | arf3DS4 "mnames" class
show-method | arf3DS4 "model" class
show-method | arf3DS4 "options" class
show-method | arf3DS4 "sequence" class
show-method | arf3DS4 "version" class
showModels | List all models for a subject/condition.
summary-method | arf3DS4 "fmri.data" class

## -- V --

varcov | Calculate (co)variance matrix of an ARF model.
version-class | arf3DS4 "version" class

## -- W --

wald | Calculate Wald statistics for an arf model.
wald-class | arf3DS4 "wald" class
writeData | Write NIFTI/ANALYZE files.

## -- misc --

.arfcorrelation.corr-method | Class "arfcorrelation"
.arfcorrelation.corr.pval-method | Class "arfcorrelation"
.arfcorrelation.corr.pval<--method | Class "arfcorrelation"
.arfcorrelation.corr<--method | Class "arfcorrelation"
.arfcorrelation.num.corr-method | Class "arfcorrelation"
.arfcorrelation.num.corr<--method | Class "arfcorrelation"
.arfcorrelation.pacorr-method | Class "arfcorrelation"
.arfcorrelation.pacorr.pval-method | Class "arfcorrelation"
.arfcorrelation.pacorr.pval<--method | Class "arfcorrelation"
.arfcorrelation.pacorr<--method | Class "arfcorrelation"
.arfcorrelation.timebyreg-method | Class "arfcorrelation"
.arfcorrelation.timebyreg<--method | Class "arfcorrelation"
.data.avgdatfile-method | arf3DS4 "data" class
.data.avgdatfile<--method | arf3DS4 "data" class
.data.avgtstatFile-method | arf3DS4 "data" class
.data.avgtstatFile<--method | arf3DS4 "data" class
.data.avgWfile-method | arf3DS4 "data" class
.data.avgWfile<--method | arf3DS4 "data" class
.data.betafiles-method | arf3DS4 "data" class
.data.betafiles<--method | arf3DS4 "data" class
.data.dataHeader-method | arf3DS4 "data" class
.data.dataHeader<--method | arf3DS4 "data" class
.data.fullpath-method | arf3DS4 "data" class
.data.fullpath<--method | arf3DS4 "data" class
.data.funcDir-method | arf3DS4 "data" class
.data.funcDir<--method | arf3DS4 "data" class
.data.funcRda-method | arf3DS4 "data" class
.data.funcRda<--method | arf3DS4 "data" class
.data.mask-method | arf3DS4 "data" class
.data.mask<--method | arf3DS4 "data" class
.data.n-method | arf3DS4 "data" class
.data.n<--method | arf3DS4 "data" class
.data.name-method | arf3DS4 "data" class
.data.name<--method | arf3DS4 "data" class
.data.regDir-method | arf3DS4 "data" class
.data.regDir<--method | arf3DS4 "data" class
.data.regRda-method | arf3DS4 "data" class
.data.regRda<--method | arf3DS4 "data" class
.data.runs-method | arf3DS4 "data" class
.data.runs<--method | arf3DS4 "data" class
.data.ss-method | arf3DS4 "data" class
.data.ss<--method | arf3DS4 "data" class
.data.version-method | arf3DS4 "data" class
.data.version<--method | arf3DS4 "data" class
.data.weightfiles-method | arf3DS4 "data" class
.data.weightfiles<--method | arf3DS4 "data" class
.example | Activated Region Fitting Example Dataset
.experiment.avgdatFile-method | arf3DS4 "experiment" class
.experiment.avgdatFile<--method | arf3DS4 "experiment" class
.experiment.avgDir-method | arf3DS4 "experiment" class
.experiment.avgDir<--method | arf3DS4 "experiment" class
.experiment.avgtstatFile-method | arf3DS4 "experiment" class
.experiment.avgtstatFile<--method | arf3DS4 "experiment" class
.experiment.avgWFile-method | arf3DS4 "experiment" class
.experiment.avgWFile<--method | arf3DS4 "experiment" class
.experiment.betaDir-method | arf3DS4 "experiment" class
.experiment.betaDir<--method | arf3DS4 "experiment" class
.experiment.condition.names-method | arf3DS4 "experiment" class
.experiment.condition.names<--method | arf3DS4 "experiment" class
.experiment.condition.num-method | arf3DS4 "experiment" class
.experiment.condition.num<--method | arf3DS4 "experiment" class
.experiment.conditionDir-method | arf3DS4 "experiment" class
.experiment.conditionDir<--method | arf3DS4 "experiment" class
.experiment.conditionPrefix-method | arf3DS4 "experiment" class
.experiment.conditionPrefix<--method | arf3DS4 "experiment" class
.experiment.dataDir-method | arf3DS4 "experiment" class
.experiment.dataDir<--method | arf3DS4 "experiment" class
.experiment.dataRda-method | arf3DS4 "experiment" class
.experiment.dataRda<--method | arf3DS4 "experiment" class
.experiment.derivativeFile-method | arf3DS4 "experiment" class
.experiment.derivativeFile<--method | arf3DS4 "experiment" class
.experiment.expRda-method | arf3DS4 "experiment" class
.experiment.expRda<--method | arf3DS4 "experiment" class
.experiment.funcDir-method | arf3DS4 "experiment" class
.experiment.funcDir<--method | arf3DS4 "experiment" class
.experiment.funcRda-method | arf3DS4 "experiment" class
.experiment.funcRda<--method | arf3DS4 "experiment" class
.experiment.logFile-method | arf3DS4 "experiment" class
.experiment.logFile<--method | arf3DS4 "experiment" class
.experiment.lowresAvg-method | arf3DS4 "experiment" class
.experiment.lowresAvg<--method | arf3DS4 "experiment" class
.experiment.lowresFile-method | arf3DS4 "experiment" class
.experiment.lowresFile<--method | arf3DS4 "experiment" class
.experiment.modelDataFile-method | arf3DS4 "experiment" class
.experiment.modelDataFile<--method | arf3DS4 "experiment" class
.experiment.modeldatDir-method | arf3DS4 "experiment" class
.experiment.modeldatDir<--method | arf3DS4 "experiment" class
.experiment.modelDir-method | arf3DS4 "experiment" class
.experiment.modelDir<--method | arf3DS4 "experiment" class
.experiment.modelnamesRda-method | arf3DS4 "experiment" class
.experiment.modelnamesRda<--method | arf3DS4 "experiment" class
.experiment.modelPrefix-method | arf3DS4 "experiment" class
.experiment.modelPrefix<--method | arf3DS4 "experiment" class
.experiment.modelRda-method | arf3DS4 "experiment" class
.experiment.modelRda<--method | arf3DS4 "experiment" class
.experiment.name-method | arf3DS4 "experiment" class
.experiment.name<--method | arf3DS4 "experiment" class
.experiment.optionsRda-method | arf3DS4 "experiment" class
.experiment.optionsRda<--method | arf3DS4 "experiment" class
.experiment.path-method | arf3DS4 "experiment" class
.experiment.path<--method | arf3DS4 "experiment" class
.experiment.regDir-method | arf3DS4 "experiment" class
.experiment.regDir<--method | arf3DS4 "experiment" class
.experiment.regRda-method | arf3DS4 "experiment" class
.experiment.regRda<--method | arf3DS4 "experiment" class
.experiment.residualFile-method | arf3DS4 "experiment" class
.experiment.residualFile<--method | arf3DS4 "experiment" class
.experiment.startRda-method | arf3DS4 "experiment" class
.experiment.startRda<--method | arf3DS4 "experiment" class
.experiment.statsDir-method | arf3DS4 "experiment" class
.experiment.statsDir<--method | arf3DS4 "experiment" class
.experiment.statsRda-method | arf3DS4 "experiment" class
.experiment.statsRda<--method | arf3DS4 "experiment" class
.experiment.subject.names-method | arf3DS4 "experiment" class
.experiment.subject.names<--method | arf3DS4 "experiment" class
.experiment.subject.num-method | arf3DS4 "experiment" class
.experiment.subject.num<--method | arf3DS4 "experiment" class
.experiment.subjectDir-method | arf3DS4 "experiment" class
.experiment.subjectDir<--method | arf3DS4 "experiment" class
.experiment.subjectPrefix-method | arf3DS4 "experiment" class
.experiment.subjectPrefix<--method | arf3DS4 "experiment" class
.experiment.version-method | arf3DS4 "experiment" class
.experiment.version<--method | arf3DS4 "experiment" class
.experiment.weightFile-method | arf3DS4 "experiment" class
.experiment.weightFile<--method | arf3DS4 "experiment" class
.experiment.weightsDir-method | arf3DS4 "experiment" class
.experiment.weightsDir<--method | arf3DS4 "experiment" class
.fmri.data.aux_file-method | arf3DS4 "fmri.data" class
.fmri.data.aux_file<--method | arf3DS4 "fmri.data" class
.fmri.data.bitpix-method | arf3DS4 "fmri.data" class
.fmri.data.bitpix<--method | arf3DS4 "fmri.data" class
.fmri.data.cal_max-method | arf3DS4 "fmri.data" class
.fmri.data.cal_max<--method | arf3DS4 "fmri.data" class
.fmri.data.cal_min-method | arf3DS4 "fmri.data" class
.fmri.data.cal_min<--method | arf3DS4 "fmri.data" class
.fmri.data.data.signed-method | arf3DS4 "fmri.data" class
.fmri.data.data.signed<--method | arf3DS4 "fmri.data" class
.fmri.data.data.type-method | arf3DS4 "fmri.data" class
.fmri.data.data.type<--method | arf3DS4 "fmri.data" class
.fmri.data.datatype-method | arf3DS4 "fmri.data" class
.fmri.data.datatype<--method | arf3DS4 "fmri.data" class
.fmri.data.datavec-method | arf3DS4 "fmri.data" class
.fmri.data.datavec<--method | arf3DS4 "fmri.data" class
.fmri.data.data_type-method | arf3DS4 "fmri.data" class
.fmri.data.data_type<--method | arf3DS4 "fmri.data" class
.fmri.data.db_name-method | arf3DS4 "fmri.data" class
.fmri.data.db_name<--method | arf3DS4 "fmri.data" class
.fmri.data.descrip-method | arf3DS4 "fmri.data" class
.fmri.data.descrip<--method | arf3DS4 "fmri.data" class
.fmri.data.dims-method | arf3DS4 "fmri.data" class
.fmri.data.dims<--method | arf3DS4 "fmri.data" class
.fmri.data.dim_info-method | arf3DS4 "fmri.data" class
.fmri.data.dim_info<--method | arf3DS4 "fmri.data" class
.fmri.data.endian-method | arf3DS4 "fmri.data" class
.fmri.data.endian<--method | arf3DS4 "fmri.data" class
.fmri.data.extension-method | arf3DS4 "fmri.data" class
.fmri.data.extension<--method | arf3DS4 "fmri.data" class
.fmri.data.extents-method | arf3DS4 "fmri.data" class
.fmri.data.extents<--method | arf3DS4 "fmri.data" class
.fmri.data.filename-method | arf3DS4 "fmri.data" class
.fmri.data.filename<--method | arf3DS4 "fmri.data" class
.fmri.data.filetype-method | arf3DS4 "fmri.data" class
.fmri.data.filetype<--method | arf3DS4 "fmri.data" class
.fmri.data.fullpath-method | arf3DS4 "fmri.data" class
.fmri.data.fullpath<--method | arf3DS4 "fmri.data" class
.fmri.data.glmax-method | arf3DS4 "fmri.data" class
.fmri.data.glmax<--method | arf3DS4 "fmri.data" class
.fmri.data.glmin-method | arf3DS4 "fmri.data" class
.fmri.data.glmin<--method | arf3DS4 "fmri.data" class
.fmri.data.gzipped-method | arf3DS4 "fmri.data" class
.fmri.data.gzipped<--method | arf3DS4 "fmri.data" class
.fmri.data.intent_code-method | arf3DS4 "fmri.data" class
.fmri.data.intent_code<--method | arf3DS4 "fmri.data" class
.fmri.data.intent_name-method | arf3DS4 "fmri.data" class
.fmri.data.intent_name<--method | arf3DS4 "fmri.data" class
.fmri.data.intent_p1-method | arf3DS4 "fmri.data" class
.fmri.data.intent_p1<--method | arf3DS4 "fmri.data" class
.fmri.data.intent_p2-method | arf3DS4 "fmri.data" class
.fmri.data.intent_p2<--method | arf3DS4 "fmri.data" class
.fmri.data.intent_p3-method | arf3DS4 "fmri.data" class
.fmri.data.intent_p3<--method | arf3DS4 "fmri.data" class
.fmri.data.magic-method | arf3DS4 "fmri.data" class
.fmri.data.magic<--method | arf3DS4 "fmri.data" class
.fmri.data.pixdim-method | arf3DS4 "fmri.data" class
.fmri.data.pixdim<--method | arf3DS4 "fmri.data" class
.fmri.data.qform_code-method | arf3DS4 "fmri.data" class
.fmri.data.qform_code<--method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_x-method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_x<--method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_y-method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_y<--method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_z-method | arf3DS4 "fmri.data" class
.fmri.data.qoffset_z<--method | arf3DS4 "fmri.data" class
.fmri.data.quatern_b-method | arf3DS4 "fmri.data" class
.fmri.data.quatern_b<--method | arf3DS4 "fmri.data" class
.fmri.data.quatern_c-method | arf3DS4 "fmri.data" class
.fmri.data.quatern_c<--method | arf3DS4 "fmri.data" class
.fmri.data.quatern_d-method | arf3DS4 "fmri.data" class
.fmri.data.quatern_d<--method | arf3DS4 "fmri.data" class
.fmri.data.regular-method | arf3DS4 "fmri.data" class
.fmri.data.regular<--method | arf3DS4 "fmri.data" class
.fmri.data.scl_inter-method | arf3DS4 "fmri.data" class
.fmri.data.scl_inter<--method | arf3DS4 "fmri.data" class
.fmri.data.scl_slope-method | arf3DS4 "fmri.data" class
.fmri.data.scl_slope<--method | arf3DS4 "fmri.data" class
.fmri.data.session_error-method | arf3DS4 "fmri.data" class
.fmri.data.session_error<--method | arf3DS4 "fmri.data" class
.fmri.data.sform_code-method | arf3DS4 "fmri.data" class
.fmri.data.sform_code<--method | arf3DS4 "fmri.data" class
.fmri.data.sizeof_hdr-method | arf3DS4 "fmri.data" class
.fmri.data.sizeof_hdr<--method | arf3DS4 "fmri.data" class
.fmri.data.slice_code-method | arf3DS4 "fmri.data" class
.fmri.data.slice_code<--method | arf3DS4 "fmri.data" class
.fmri.data.slice_duration-method | arf3DS4 "fmri.data" class
.fmri.data.slice_duration<--method | arf3DS4 "fmri.data" class
.fmri.data.slice_end-method | arf3DS4 "fmri.data" class
.fmri.data.slice_end<--method | arf3DS4 "fmri.data" class
.fmri.data.slice_start-method | arf3DS4 "fmri.data" class
.fmri.data.slice_start<--method | arf3DS4 "fmri.data" class
.fmri.data.srow_x-method | arf3DS4 "fmri.data" class
.fmri.data.srow_x<--method | arf3DS4 "fmri.data" class
.fmri.data.srow_y-method | arf3DS4 "fmri.data" class
.fmri.data.srow_y<--method | arf3DS4 "fmri.data" class
.fmri.data.srow_z-method | arf3DS4 "fmri.data" class
.fmri.data.srow_z<--method | arf3DS4 "fmri.data" class
.fmri.data.toffset-method | arf3DS4 "fmri.data" class
.fmri.data.toffset<--method | arf3DS4 "fmri.data" class
.fmri.data.version-method | arf3DS4 "fmri.data" class
.fmri.data.version<--method | arf3DS4 "fmri.data" class
.fmri.data.vox_offset-method | arf3DS4 "fmri.data" class
.fmri.data.vox_offset<--method | arf3DS4 "fmri.data" class
.fmri.data.xyzt_units-method | arf3DS4 "fmri.data" class
.fmri.data.xyzt_units<--method | arf3DS4 "fmri.data" class
.functional.filename-method | arf3DS4 "functional" class
.functional.filename<--method | arf3DS4 "functional" class
.functional.fullpath-method | arf3DS4 "functional" class
.functional.fullpath<--method | arf3DS4 "functional" class
.functional.functionaldata-method | arf3DS4 "functional" class
.functional.functionaldata<--method | arf3DS4 "functional" class
.functional.linkedfile-method | arf3DS4 "functional" class
.functional.linkedfile<--method | arf3DS4 "functional" class
.functional.linkedfiles-method | arf3DS4 "functional" class
.functional.linkedfiles<--method | arf3DS4 "functional" class
.functional.timings-method | arf3DS4 "functional" class
.functional.timings<--method | arf3DS4 "functional" class
.functional.version-method | arf3DS4 "functional" class
.functional.version<--method | arf3DS4 "functional" class
.mnames.condition-method | arf3DS4 "mnames" class
.mnames.condition<--method | arf3DS4 "mnames" class
.mnames.experiment-method | arf3DS4 "mnames" class
.mnames.experiment<--method | arf3DS4 "mnames" class
.mnames.mnames-method | arf3DS4 "mnames" class
.mnames.mnames<--method | arf3DS4 "mnames" class
.mnames.subject-method | arf3DS4 "mnames" class
.mnames.subject<--method | arf3DS4 "mnames" class
.model.avgdatfile-method | arf3DS4 "model" class
.model.avgdatfile<--method | arf3DS4 "model" class
.model.avgtstatFile-method | arf3DS4 "model" class
.model.avgtstatFile<--method | arf3DS4 "model" class
.model.avgWfile-method | arf3DS4 "model" class
.model.avgWfile<--method | arf3DS4 "model" class
.model.betafiles-method | arf3DS4 "model" class
.model.betafiles<--method | arf3DS4 "model" class
.model.convergence-method | arf3DS4 "model" class
.model.convergence<--method | arf3DS4 "model" class
.model.dataHeader-method | arf3DS4 "model" class
.model.dataHeader<--method | arf3DS4 "model" class
.model.derivativeFile-method | arf3DS4 "model" class
.model.derivativeFile<--method | arf3DS4 "model" class
.model.estimates-method | arf3DS4 "model" class
.model.estimates<--method | arf3DS4 "model" class
.model.fit-method | arf3DS4 "model" class
.model.fit<--method | arf3DS4 "model" class
.model.fullmodelDataFile-method | arf3DS4 "model" class
.model.fullmodelDataFile<--method | arf3DS4 "model" class
.model.fullpath-method | arf3DS4 "model" class
.model.fullpath<--method | arf3DS4 "model" class
.model.funcDir-method | arf3DS4 "model" class
.model.funcDir<--method | arf3DS4 "model" class
.model.funcRda-method | arf3DS4 "model" class
.model.funcRda<--method | arf3DS4 "model" class
.model.gradient-method | arf3DS4 "model" class
.model.gradient<--method | arf3DS4 "model" class
.model.hessian-method | arf3DS4 "model" class
.model.hessian<--method | arf3DS4 "model" class
.model.iterates-method | arf3DS4 "model" class
.model.iterates<--method | arf3DS4 "model" class
.model.logFile-method | arf3DS4 "model" class
.model.logFile<--method | arf3DS4 "model" class
.model.mask-method | arf3DS4 "model" class
.model.mask<--method | arf3DS4 "model" class
.model.minimum-method | arf3DS4 "model" class
.model.minimum<--method | arf3DS4 "model" class
.model.modelDataFile-method | arf3DS4 "model" class
.model.modelDataFile<--method | arf3DS4 "model" class
.model.modeldatapath-method | arf3DS4 "model" class
.model.modeldatapath<--method | arf3DS4 "model" class
.model.modelFile-method | arf3DS4 "model" class
.model.modelFile<--method | arf3DS4 "model" class
.model.modelname-method | arf3DS4 "model" class
.model.modelname<--method | arf3DS4 "model" class
.model.modelpath-method | arf3DS4 "model" class
.model.modelpath<--method | arf3DS4 "model" class
.model.modeltype-method | arf3DS4 "model" class
.model.modeltype<--method | arf3DS4 "model" class
.model.n-method | arf3DS4 "model" class
.model.n<--method | arf3DS4 "model" class
.model.name-method | arf3DS4 "model" class
.model.name<--method | arf3DS4 "model" class
.model.optionsFile-method | arf3DS4 "model" class
.model.optionsFile<--method | arf3DS4 "model" class
.model.params-method | arf3DS4 "model" class
.model.params<--method | arf3DS4 "model" class
.model.proctime-method | arf3DS4 "model" class
.model.proctime<--method | arf3DS4 "model" class
.model.regDir-method | arf3DS4 "model" class
.model.regDir<--method | arf3DS4 "model" class
.model.regions-method | arf3DS4 "model" class
.model.regions<--method | arf3DS4 "model" class
.model.regRda-method | arf3DS4 "model" class
.model.regRda<--method | arf3DS4 "model" class
.model.residualFile-method | arf3DS4 "model" class
.model.residualFile<--method | arf3DS4 "model" class
.model.runs-method | arf3DS4 "model" class
.model.runs<--method | arf3DS4 "model" class
.model.sandwichmethod-method | arf3DS4 "model" class
.model.sandwichmethod<--method | arf3DS4 "model" class
.model.ss-method | arf3DS4 "model" class
.model.ss<--method | arf3DS4 "model" class
.model.startFile-method | arf3DS4 "model" class
.model.startFile<--method | arf3DS4 "model" class
.model.startval-method | arf3DS4 "model" class
.model.startval<--method | arf3DS4 "model" class
.model.valid-method | arf3DS4 "model" class
.model.valid<--method | arf3DS4 "model" class
.model.varcov-method | arf3DS4 "model" class
.model.varcov<--method | arf3DS4 "model" class
.model.version-method | arf3DS4 "model" class
.model.version<--method | arf3DS4 "model" class
.model.wald-method | arf3DS4 "model" class
.model.wald<--method | arf3DS4 "model" class
.model.warnings-method | arf3DS4 "model" class
.model.warnings<--method | arf3DS4 "model" class
.model.weightFile-method | arf3DS4 "model" class
.model.weightFile<--method | arf3DS4 "model" class
.model.weightfiles-method | arf3DS4 "model" class
.model.weightfiles<--method | arf3DS4 "model" class
.nifti.fileinfo.endian-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.endian<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.extension-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.extension<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.filename-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.filename<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.filetype-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.filetype<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.fullpath-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.fullpath<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.gzipped-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.gzipped<--method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.version-method | arf3DS4 "nifti.fileinfo" class
.nifti.fileinfo.version<--method | arf3DS4 "nifti.fileinfo" class
.nifti.header.aux_file-method | arf3DS4 "nifti.header" class
.nifti.header.aux_file<--method | arf3DS4 "nifti.header" class
.nifti.header.bitpix-method | arf3DS4 "nifti.header" class
.nifti.header.bitpix<--method | arf3DS4 "nifti.header" class
.nifti.header.cal_max-method | arf3DS4 "nifti.header" class
.nifti.header.cal_max<--method | arf3DS4 "nifti.header" class
.nifti.header.cal_min-method | arf3DS4 "nifti.header" class
.nifti.header.cal_min<--method | arf3DS4 "nifti.header" class
.nifti.header.data.signed-method | arf3DS4 "nifti.header" class
.nifti.header.data.signed<--method | arf3DS4 "nifti.header" class
.nifti.header.data.type-method | arf3DS4 "nifti.header" class
.nifti.header.data.type<--method | arf3DS4 "nifti.header" class
.nifti.header.datatype-method | arf3DS4 "nifti.header" class
.nifti.header.datatype<--method | arf3DS4 "nifti.header" class
.nifti.header.data_type-method | arf3DS4 "nifti.header" class
.nifti.header.data_type<--method | arf3DS4 "nifti.header" class
.nifti.header.db_name-method | arf3DS4 "nifti.header" class
.nifti.header.db_name<--method | arf3DS4 "nifti.header" class
.nifti.header.descrip-method | arf3DS4 "nifti.header" class
.nifti.header.descrip<--method | arf3DS4 "nifti.header" class
.nifti.header.dims-method | arf3DS4 "nifti.header" class
.nifti.header.dims<--method | arf3DS4 "nifti.header" class
.nifti.header.dim_info-method | arf3DS4 "nifti.header" class
.nifti.header.dim_info<--method | arf3DS4 "nifti.header" class
.nifti.header.endian-method | arf3DS4 "nifti.header" class
.nifti.header.endian<--method | arf3DS4 "nifti.header" class
.nifti.header.extension-method | arf3DS4 "nifti.header" class
.nifti.header.extension<--method | arf3DS4 "nifti.header" class
.nifti.header.extents-method | arf3DS4 "nifti.header" class
.nifti.header.extents<--method | arf3DS4 "nifti.header" class
.nifti.header.filename-method | arf3DS4 "nifti.header" class
.nifti.header.filename<--method | arf3DS4 "nifti.header" class
.nifti.header.filetype-method | arf3DS4 "nifti.header" class
.nifti.header.filetype<--method | arf3DS4 "nifti.header" class
.nifti.header.fullpath-method | arf3DS4 "nifti.header" class
.nifti.header.fullpath<--method | arf3DS4 "nifti.header" class
.nifti.header.glmax-method | arf3DS4 "nifti.header" class
.nifti.header.glmax<--method | arf3DS4 "nifti.header" class
.nifti.header.glmin-method | arf3DS4 "nifti.header" class
.nifti.header.glmin<--method | arf3DS4 "nifti.header" class
.nifti.header.gzipped-method | arf3DS4 "nifti.header" class
.nifti.header.gzipped<--method | arf3DS4 "nifti.header" class
.nifti.header.intent_code-method | arf3DS4 "nifti.header" class
.nifti.header.intent_code<--method | arf3DS4 "nifti.header" class
.nifti.header.intent_name-method | arf3DS4 "nifti.header" class
.nifti.header.intent_name<--method | arf3DS4 "nifti.header" class
.nifti.header.intent_p1-method | arf3DS4 "nifti.header" class
.nifti.header.intent_p1<--method | arf3DS4 "nifti.header" class
.nifti.header.intent_p2-method | arf3DS4 "nifti.header" class
.nifti.header.intent_p2<--method | arf3DS4 "nifti.header" class
.nifti.header.intent_p3-method | arf3DS4 "nifti.header" class
.nifti.header.intent_p3<--method | arf3DS4 "nifti.header" class
.nifti.header.magic-method | arf3DS4 "nifti.header" class
.nifti.header.magic<--method | arf3DS4 "nifti.header" class
.nifti.header.pixdim-method | arf3DS4 "nifti.header" class
.nifti.header.pixdim<--method | arf3DS4 "nifti.header" class
.nifti.header.qform_code-method | arf3DS4 "nifti.header" class
.nifti.header.qform_code<--method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_x-method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_x<--method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_y-method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_y<--method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_z-method | arf3DS4 "nifti.header" class
.nifti.header.qoffset_z<--method | arf3DS4 "nifti.header" class
.nifti.header.quatern_b-method | arf3DS4 "nifti.header" class
.nifti.header.quatern_b<--method | arf3DS4 "nifti.header" class
.nifti.header.quatern_c-method | arf3DS4 "nifti.header" class
.nifti.header.quatern_c<--method | arf3DS4 "nifti.header" class
.nifti.header.quatern_d-method | arf3DS4 "nifti.header" class
.nifti.header.quatern_d<--method | arf3DS4 "nifti.header" class
.nifti.header.regular-method | arf3DS4 "nifti.header" class
.nifti.header.regular<--method | arf3DS4 "nifti.header" class
.nifti.header.scl_inter-method | arf3DS4 "nifti.header" class
.nifti.header.scl_inter<--method | arf3DS4 "nifti.header" class
.nifti.header.scl_slope-method | arf3DS4 "nifti.header" class
.nifti.header.scl_slope<--method | arf3DS4 "nifti.header" class
.nifti.header.session_error-method | arf3DS4 "nifti.header" class
.nifti.header.session_error<--method | arf3DS4 "nifti.header" class
.nifti.header.sform_code-method | arf3DS4 "nifti.header" class
.nifti.header.sform_code<--method | arf3DS4 "nifti.header" class
.nifti.header.sizeof_hdr-method | arf3DS4 "nifti.header" class
.nifti.header.sizeof_hdr<--method | arf3DS4 "nifti.header" class
.nifti.header.slice_code-method | arf3DS4 "nifti.header" class
.nifti.header.slice_code<--method | arf3DS4 "nifti.header" class
.nifti.header.slice_duration-method | arf3DS4 "nifti.header" class
.nifti.header.slice_duration<--method | arf3DS4 "nifti.header" class
.nifti.header.slice_end-method | arf3DS4 "nifti.header" class
.nifti.header.slice_end<--method | arf3DS4 "nifti.header" class
.nifti.header.slice_start-method | arf3DS4 "nifti.header" class
.nifti.header.slice_start<--method | arf3DS4 "nifti.header" class
.nifti.header.srow_x-method | arf3DS4 "nifti.header" class
.nifti.header.srow_x<--method | arf3DS4 "nifti.header" class
.nifti.header.srow_y-method | arf3DS4 "nifti.header" class
.nifti.header.srow_y<--method | arf3DS4 "nifti.header" class
.nifti.header.srow_z-method | arf3DS4 "nifti.header" class
.nifti.header.srow_z<--method | arf3DS4 "nifti.header" class
.nifti.header.toffset-method | arf3DS4 "nifti.header" class
.nifti.header.toffset<--method | arf3DS4 "nifti.header" class
.nifti.header.version-method | arf3DS4 "nifti.header" class
.nifti.header.version<--method | arf3DS4 "nifti.header" class
.nifti.header.vox_offset-method | arf3DS4 "nifti.header" class
.nifti.header.vox_offset<--method | arf3DS4 "nifti.header" class
.nifti.header.xyzt_units-method | arf3DS4 "nifti.header" class
.nifti.header.xyzt_units<--method | arf3DS4 "nifti.header" class
.options.adjust.n-method | arf3DS4 "options" class
.options.adjust.n<--method | arf3DS4 "options" class
.options.chk.method-method | arf3DS4 "options" class
.options.chk.method<--method | arf3DS4 "options" class
.options.chk.range-method | arf3DS4 "options" class
.options.chk.range<--method | arf3DS4 "options" class
.options.min.analyticalgrad-method | arf3DS4 "options" class
.options.min.analyticalgrad<--method | arf3DS4 "options" class
.options.min.boundlim-method | arf3DS4 "options" class
.options.min.boundlim<--method | arf3DS4 "options" class
.options.min.iterlim-method | arf3DS4 "options" class
.options.min.iterlim<--method | arf3DS4 "options" class
.options.min.routine-method | arf3DS4 "options" class
.options.min.routine<--method | arf3DS4 "options" class
.options.nlm.gradtol-method | arf3DS4 "options" class
.options.nlm.gradtol<--method | arf3DS4 "options" class
.options.nlm.steptol-method | arf3DS4 "options" class
.options.nlm.steptol<--method | arf3DS4 "options" class
.options.opt.lower-method | arf3DS4 "options" class
.options.opt.lower<--method | arf3DS4 "options" class
.options.opt.method-method | arf3DS4 "options" class
.options.opt.method<--method | arf3DS4 "options" class
.options.opt.upper-method | arf3DS4 "options" class
.options.opt.upper<--method | arf3DS4 "options" class
.options.output.mode-method | arf3DS4 "options" class
.options.output.mode<--method | arf3DS4 "options" class
.options.start.maxfac-method | arf3DS4 "options" class
.options.start.maxfac<--method | arf3DS4 "options" class
.options.start.method-method | arf3DS4 "options" class
.options.start.method<--method | arf3DS4 "options" class
.options.start.vector-method | arf3DS4 "options" class
.options.start.vector<--method | arf3DS4 "options" class
.options.sw.type-method | arf3DS4 "options" class
.options.sw.type<--method | arf3DS4 "options" class
.options.version-method | arf3DS4 "options" class
.options.version<--method | arf3DS4 "options" class
.registration.Aex2hi-method | arf3DS4 "registration" class
.registration.Aex2hi<--method | arf3DS4 "registration" class
.registration.Ahi2st-method | arf3DS4 "registration" class
.registration.Ahi2st<--method | arf3DS4 "registration" class
.registration.Dex-method | arf3DS4 "registration" class
.registration.Dex<--method | arf3DS4 "registration" class
.registration.Dhi-method | arf3DS4 "registration" class
.registration.Dhi<--method | arf3DS4 "registration" class
.registration.Dst-method | arf3DS4 "registration" class
.registration.Dst<--method | arf3DS4 "registration" class
.registration.examp2high-method | arf3DS4 "registration" class
.registration.examp2high<--method | arf3DS4 "registration" class
.registration.examp2stand-method | arf3DS4 "registration" class
.registration.examp2stand<--method | arf3DS4 "registration" class
.registration.example-method | arf3DS4 "registration" class
.registration.example<--method | arf3DS4 "registration" class
.registration.filename-method | arf3DS4 "registration" class
.registration.filename<--method | arf3DS4 "registration" class
.registration.fullpath-method | arf3DS4 "registration" class
.registration.fullpath<--method | arf3DS4 "registration" class
.registration.high2stand-method | arf3DS4 "registration" class
.registration.high2stand<--method | arf3DS4 "registration" class
.registration.highres-method | arf3DS4 "registration" class
.registration.highres<--method | arf3DS4 "registration" class
.registration.linkedfile-method | arf3DS4 "registration" class
.registration.linkedfile<--method | arf3DS4 "registration" class
.registration.OXst-method | arf3DS4 "registration" class
.registration.OXst<--method | arf3DS4 "registration" class
.registration.standard-method | arf3DS4 "registration" class
.registration.standard<--method | arf3DS4 "registration" class
.registration.SXhi-method | arf3DS4 "registration" class
.registration.SXhi<--method | arf3DS4 "registration" class
.registration.version-method | arf3DS4 "registration" class
.registration.version<--method | arf3DS4 "registration" class
.sequence.best-method | arf3DS4 "sequence" class
.sequence.best<--method | arf3DS4 "sequence" class
.sequence.current-method | arf3DS4 "sequence" class
.sequence.current<--method | arf3DS4 "sequence" class
.sequence.fit-method | arf3DS4 "sequence" class
.sequence.fit<--method | arf3DS4 "sequence" class
.sequence.minimum-method | arf3DS4 "sequence" class
.sequence.minimum<--method | arf3DS4 "sequence" class
.sequence.mnames-method | arf3DS4 "sequence" class
.sequence.mnames<--method | arf3DS4 "sequence" class
.sequence.regions-method | arf3DS4 "sequence" class
.sequence.regions<--method | arf3DS4 "sequence" class
.sequence.valid-method | arf3DS4 "sequence" class
.sequence.valid<--method | arf3DS4 "sequence" class
.settings.avgdatFile-method | arf3DS4 "settings" class
.settings.avgdatFile<--method | arf3DS4 "settings" class
.settings.avgDir-method | arf3DS4 "settings" class
.settings.avgDir<--method | arf3DS4 "settings" class
.settings.avgtstatFile-method | arf3DS4 "settings" class
.settings.avgtstatFile<--method | arf3DS4 "settings" class
.settings.avgWFile-method | arf3DS4 "settings" class
.settings.avgWFile<--method | arf3DS4 "settings" class
.settings.betaDir-method | arf3DS4 "settings" class
.settings.betaDir<--method | arf3DS4 "settings" class
.settings.conditionDir-method | arf3DS4 "settings" class
.settings.conditionDir<--method | arf3DS4 "settings" class
.settings.conditionPrefix-method | arf3DS4 "settings" class
.settings.conditionPrefix<--method | arf3DS4 "settings" class
.settings.dataDir-method | arf3DS4 "settings" class
.settings.dataDir<--method | arf3DS4 "settings" class
.settings.dataRda-method | arf3DS4 "settings" class
.settings.dataRda<--method | arf3DS4 "settings" class
.settings.derivativeFile-method | arf3DS4 "settings" class
.settings.derivativeFile<--method | arf3DS4 "settings" class
.settings.expRda-method | arf3DS4 "settings" class
.settings.expRda<--method | arf3DS4 "settings" class
.settings.funcDir-method | arf3DS4 "settings" class
.settings.funcDir<--method | arf3DS4 "settings" class
.settings.funcRda-method | arf3DS4 "settings" class
.settings.funcRda<--method | arf3DS4 "settings" class
.settings.logFile-method | arf3DS4 "settings" class
.settings.logFile<--method | arf3DS4 "settings" class
.settings.lowresAvg-method | arf3DS4 "settings" class
.settings.lowresAvg<--method | arf3DS4 "settings" class
.settings.lowresFile-method | arf3DS4 "settings" class
.settings.lowresFile<--method | arf3DS4 "settings" class
.settings.modelDataFile-method | arf3DS4 "settings" class
.settings.modelDataFile<--method | arf3DS4 "settings" class
.settings.modeldatDir-method | arf3DS4 "settings" class
.settings.modeldatDir<--method | arf3DS4 "settings" class
.settings.modelDir-method | arf3DS4 "settings" class
.settings.modelDir<--method | arf3DS4 "settings" class
.settings.modelnamesRda-method | arf3DS4 "settings" class
.settings.modelnamesRda<--method | arf3DS4 "settings" class
.settings.modelPrefix-method | arf3DS4 "settings" class
.settings.modelPrefix<--method | arf3DS4 "settings" class
.settings.modelRda-method | arf3DS4 "settings" class
.settings.modelRda<--method | arf3DS4 "settings" class
.settings.optionsRda-method | arf3DS4 "settings" class
.settings.optionsRda<--method | arf3DS4 "settings" class
.settings.regDir-method | arf3DS4 "settings" class
.settings.regDir<--method | arf3DS4 "settings" class
.settings.regRda-method | arf3DS4 "settings" class
.settings.regRda<--method | arf3DS4 "settings" class
.settings.residualFile-method | arf3DS4 "settings" class
.settings.residualFile<--method | arf3DS4 "settings" class
.settings.startRda-method | arf3DS4 "settings" class
.settings.startRda<--method | arf3DS4 "settings" class
.settings.statsDir-method | arf3DS4 "settings" class
.settings.statsDir<--method | arf3DS4 "settings" class
.settings.statsRda-method | arf3DS4 "settings" class
.settings.statsRda<--method | arf3DS4 "settings" class
.settings.subjectDir-method | arf3DS4 "settings" class
.settings.subjectDir<--method | arf3DS4 "settings" class
.settings.subjectPrefix-method | arf3DS4 "settings" class
.settings.subjectPrefix<--method | arf3DS4 "settings" class
.settings.version-method | arf3DS4 "settings" class
.settings.version<--method | arf3DS4 "settings" class
.settings.weightFile-method | arf3DS4 "settings" class
.settings.weightFile<--method | arf3DS4 "settings" class
.settings.weightsDir-method | arf3DS4 "settings" class
.settings.weightsDir<--method | arf3DS4 "settings" class
.version.build-method | arf3DS4 "version" class
.version.build<--method | arf3DS4 "version" class
.version.svnrev-method | arf3DS4 "version" class
.version.svnrev<--method | arf3DS4 "version" class
.version.update-method | arf3DS4 "version" class
.version.update<--method | arf3DS4 "version" class
.version.version-method | arf3DS4 "version" class
.version.version<--method | arf3DS4 "version" class
.wald.consts-method | arf3DS4 "wald" class
.wald.consts<--method | arf3DS4 "wald" class
.wald.df1-method | arf3DS4 "wald" class
.wald.df1<--method | arf3DS4 "wald" class
.wald.df2-method | arf3DS4 "wald" class
.wald.df2<--method | arf3DS4 "wald" class
.wald.pvalues-method | arf3DS4 "wald" class
.wald.pvalues<--method | arf3DS4 "wald" class
.wald.stats-method | arf3DS4 "wald" class
.wald.stats<--method | arf3DS4 "wald" class
[-method | Extract/replace elements of an fmri.data object
[<--method | Extract/replace elements of an fmri.data object