Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product


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Documentation for package ‘ARTP’ version 2.0.5

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ARTP Gene and pathway p-values using the Adaptive Rank Truncated Product test
ARTP_pathway Gene and pathway p-values using ARTP
gene.list List to describe the gene-SNP file
gene_SNP_data Gene-SNP data
geno_data Sample genotype data
obs_pvalues Observed p-values
perm_pvalues Permutation p-values
pheno.list List to describe the covariate and outcome data
pheno_data Sample covariate and response data
plot_genes Gene Plot
runPermutations Calculate observed and permutation p-values for SNPs
single.marker.test Single SNP test
snp.list List to describe the genotype data