# Pathway and Gene-Level Association Test

## Documentation for package ‘ARTP2’ version 0.9.45

- DESCRIPTION file.

## Help Pages

ARTP2-package | Pathway and Gene-Level Association Test
ARTP2 | Pathway and Gene-Level Association Test
data | A dataset used in example of 'rARTP'.
exclude.snps | Excluding SNPs from specified regions
geno | A vector of file names used in example of 'rARTP'.
inflation | Computing the genomic control inflation factor from a given numeric vector
meta | Single-marker meta-analysis
options | options
options.default | options.default
pathway | A data frame used in example of 'rARTP'.
rARTP | ARTP test for raw data
read.bed | Reading data from binary PLINK files
ref.does | Example reference genotype data coded as expected dosages.
ref.geno | A dataset used in example of 'sARTP'.
sARTP | ARTP test for summary data
subj.id | A vector of subject IDs used in example of 'sARTP'.
warm.start | Performing ARTP2 test with warm start