Modeling Phylogenetic Signals using Eigenvector Maps


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Documentation for package ‘MPSEM’ version 0.3-6

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MPSEM-package Modeling Phylogenetic Signals using Eigenvector Maps
add.edge Graph creation and manipulation functions
add.vertex Graph creation and manipulation functions
as.data.frame.PEM Class and methods for Phylogenetic Eigenvector Maps (PEM)
collapse.vertex Graph creation and manipulation functions
EvolveOptimMarkovTree Simulates the evolution of a quantitative trait.
getAncGraphLocations Phylogenetic Eigenvector Map
getGraphLocations Phylogenetic Eigenvector Map
graph-class Graph class and methods
graph-functions Graph creation and manipulation functions
lmforwardsequentialAICc Linear modelling utility functions
lmforwardsequentialsidak Linear modelling utility functions
Locations2PEMscores Phylogenetic Eigenvector Map
MPSEM Modeling Phylogenetic Signals using Eigenvector Maps
OUvar Simulates the evolution of a quantitative trait.
PEM-class Class and methods for Phylogenetic Eigenvector Maps (PEM)
PEM.build Phylogenetic Eigenvector Map
PEM.fitSimple Phylogenetic Eigenvector Map
PEM.forcedSimple Phylogenetic Eigenvector Map
PEM.updater Phylogenetic Eigenvector Map
PEMInfluence Phylogenetic Eigenvector Map
PEMvar Simulates the evolution of a quantitative trait.
PEMweights Phylogenetic Eigenvector Map
Phylo2DirectedGraph Graph creation and manipulation functions
pop.graph Graph creation and manipulation functions
predict.PEM Class and methods for Phylogenetic Eigenvector Maps (PEM)
print.graph Graph class and methods
print.PEM Class and methods for Phylogenetic Eigenvector Maps (PEM)
rm.edge Graph creation and manipulation functions
rm.vertex Graph creation and manipulation functions
trait-simulator Simulates the evolution of a quantitative trait.
TraitOUsimTree Simulates the evolution of a quantitative trait.
TraitVarGraphSim Simulates the evolution of a quantitative trait.