MPSEM-package | Modeling Phylogenetic Signals using Eigenvector Maps |
add.edge | Graph creation and manipulation functions |
add.vertex | Graph creation and manipulation functions |
as.data.frame.PEM | Class and methods for Phylogenetic Eigenvector Maps (PEM) |
collapse.vertex | Graph creation and manipulation functions |
EvolveOptimMarkovTree | Simulates the evolution of a quantitative trait. |
getAncGraphLocations | Phylogenetic Eigenvector Map |
getGraphLocations | Phylogenetic Eigenvector Map |
graph-class | Graph class and methods |
graph-functions | Graph creation and manipulation functions |
lmforwardsequentialAICc | Linear modelling utility functions |
lmforwardsequentialsidak | Linear modelling utility functions |
Locations2PEMscores | Phylogenetic Eigenvector Map |
MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |
OUvar | Simulates the evolution of a quantitative trait. |
PEM-class | Class and methods for Phylogenetic Eigenvector Maps (PEM) |
PEM.build | Phylogenetic Eigenvector Map |
PEM.fitSimple | Phylogenetic Eigenvector Map |
PEM.forcedSimple | Phylogenetic Eigenvector Map |
PEM.updater | Phylogenetic Eigenvector Map |
PEMInfluence | Phylogenetic Eigenvector Map |
PEMvar | Simulates the evolution of a quantitative trait. |
PEMweights | Phylogenetic Eigenvector Map |
Phylo2DirectedGraph | Graph creation and manipulation functions |
pop.graph | Graph creation and manipulation functions |
predict.PEM | Class and methods for Phylogenetic Eigenvector Maps (PEM) |
print.graph | Graph class and methods |
print.PEM | Class and methods for Phylogenetic Eigenvector Maps (PEM) |
rm.edge | Graph creation and manipulation functions |
rm.vertex | Graph creation and manipulation functions |
trait-simulator | Simulates the evolution of a quantitative trait. |
TraitOUsimTree | Simulates the evolution of a quantitative trait. |
TraitVarGraphSim | Simulates the evolution of a quantitative trait. |