Package: poolfstat
Maintainer: Mathieu Gautier <mathieu.gautier@inrae.fr>
Author: Mathieu Gautier
Version: 2.1.1
License: GPL (>= 2)
Title: Computing f-Statistics and Building Admixture Graphs Based on
        Allele Count or Pool-Seq Read Count Data
Description: Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).
LinkingTo: Rcpp, RcppProgress
Imports: Rcpp (>= 1.0.5), methods, utils, foreach, doParallel,
        parallel, DiagrammeR, ape, stats, zoo, Ryacas,
        Matrix,RcppProgress, progress, nnls
Depends: R (>= 3.0)
Encoding: UTF-8
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2022-05-02 09:53:16 UTC; mathieu
Repository: CRAN
Date/Publication: 2022-05-02 16:10:02 UTC
Built: R 4.2.0; x86_64-conda-linux-gnu; 2022-06-06 23:10:02 UTC; unix
