Estimate Kinship and FST under Arbitrary Population Structure

Documentation for package ‘popkin’ version 1.2.2

popkin-package	A package for estimating kinship and FST under arbitrary population structure
fst	Calculate FST from a population-level kinship matrix or vector of inbreeding coefficients
inbr	Extract inbreeding coefficients from a kinship matrix
inbr_diag	Replace kinship diagonal with inbreeding coefficients
mean_kinship	Calculate the weighted mean kinship
n_eff	Calculates the effective sample size of the data
plot_popkin	Visualize one or more kinship matrices
popkin	Estimate kinship from a genotype matrix and subpopulation assignments
pwfst	Estimate the individual-level pairwise FST matrix
rescale_popkin	Rescale kinship matrix to set a given kinship value to zero.
validate_kinship	Validate a kinship matrix
weights_subpops	Get weights for individuals that balance subpopulations
_PACKAGE	A package for estimating kinship and FST under arbitrary population structure