CpG_hits {ABC.RAP} | R Documentation |
This function calculates the number of significantly different CpG sites between cases and controls for each gene and produces a frequency table with genes that have more than one CpG site.
CpG_hits(x)
x |
Results from the overlap_data function |
data(test_data) data(nonspecific_probes) data(annotation_file) test_data_filtered <- filter_data(test_data) test_data_ttest <- ttest_data(test_data_filtered, 1, 2, 3, 4, 1e-3) test_data_delta_beta <- delta_beta_data(test_data_filtered, 1, 2, 3, 4, 0.5, -0.5, 0.94, 0.06) test_overlapped_data <- overlap_data(test_data_ttest, test_data_delta_beta) test_CpG_hits <- CpG_hits(test_overlapped_data)