zeroindx {Ac3net} | R Documentation

## The indices to force to zero correlations.

### Description

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis.

### Usage

    data("zeroindx")

### Details

The indices to force to zero correlations of E.coli expresseion data. Because REgulonDB database provided only TF-TF or TF-gene interactions. We need to remove gene-gene interactions before the performance analysis. These indice are also from (Faith, 2007), available along with the expression data.

### Source

This data was downloaded from m3d.mssm.edu/network_inference.html .

### References

Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol. 2007 Jan;5(1):e8

### Examples

    #data(zeroindx)

[Package Ac3net version 1.2.2 Index]