# Inferring Directional Conservative Causal Core Gene Networks

## Documentation for package ‘Ac3net’ version 1.2.2

- DESCRIPTION file.

## Help Pages

Ac3net | Implement Ac3net algorithm with a single function.
Ac3net.commonlinks | Find the common links between the network lists.
Ac3net.cutoff | Calculates a quick cutoff value from an adjacency matrix
Ac3net.filtersames | The correlations of the same variables are set to zero.
Ac3net.getDifferentLinks | Find the different links between the network lists.
Ac3net.getDirectedOrDualLinks | Find the unique directed or dual links in the network.
Ac3net.maxmim | Find the maximum valued partner of each variable.
Ac3net.MTC | Return adjusted p-values of the adjancency matrix.
Ac3net.performance | Find the performance of the first network based on the second.
expdata | Real E.coli Gene Expression Dataset
truenet | The known intreactions of E.coli from RegulonDB database.
zeroindx | The indices to force to zero correlations.