call_bablbs {acm4r} | R Documentation |
BABLBS clustering means that two fingerprints match if they differ only through a lost band, a gained band, or a substituted band
call_bablbs(intable, minmatch = 2)
intable |
is the name of the acm table. |
minmatch |
is the threshold of band number such that two lanes are matching if and only if the number of matching bands between them is more than minmatch. |
a matrix of 2 columns where each row represents a pair of matching lanes.
call_bablbs
doesn't work for minmatch<5
Pass the result of this function to and pass this result to
clusters
to synthesize the results
Andrea Benedetti andrea.benedetti@mcgill.ca
Sahir Rai Bhatnagar
XiaoFei Zhao
Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
#bablbs, GD1, and GD2 all work with the results from call_acm #now check matching by bablbs res_bab<-call_bablbs(res1)