call_gd2 {acm4r} | R Documentation |
Genetic Distance 2 which includes a lambda parameter
call_gd2(intable, gcrit = 2)
intable |
is the name of the acm table |
gcrit |
is the threshold of genetic distance such that two lanes are matching if and only if the genetic distance between them is less than gcrit. Is used to get a list of ids for subjects who have gd distance less than gcrit |
A matrix with two colums of fingerprint IDs. Each line
represents a match according to gcrit
.
call_gd2
doesn't work for lambda=0
Pass the result of this function to and pass this result to
clusters
to synthesize the results
Andrea Benedetti andrea.benedetti@mcgill.ca
Sahir Rai Bhatnagar
XiaoFei Zhao
Salamon et. al (1998) Accommodating Error Analysis in Comparison and Clustering of Molecular Fingerprints. Emerging Infectious Diseases Vol. 4, No. 2, April-June 1998
Abasci LLC. JAMES v1.0 User Documentation. 2002.
call_acm
for example of use
#matching by GD2 res_gd2<-call_gd2(res1)