# Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model

## Documentation for package ‘ARTIVA’ version 1.2.3

- DESCRIPTION file.

## Help Pages

ARTIVA-package | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
ARTIVA | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
ARTIVAnet | Function to run the ARTIVA procedure for Auto Regressive TIme-VArying network inference on several target genes
ARTIVAsubnet | Function to recover Auto Regressive TIme-VArying interactions between a gene of interest (referred to as "target gene") and a set of genes which may explain the expression of the target gene.
ARTIVAsubnetAnalysis | Function to estimate a regulatory time-varying network from the output of function ARTIVAsubnet.
bdu | Internal ARTIVA Functions
buildXY | Internal ARTIVA Functions
choosePriors | Function to plot an overview of possible priors for the number of changepoints and/or edges.
computePx | Internal ARTIVA Functions
computeRho3 | Internal ARTIVA Functions
computeRho4 | Internal ARTIVA Functions
cp.birth | Internal ARTIVA Functions
cp.computeAlpha | Internal ARTIVA Functions
cp.death | Internal ARTIVA Functions
CP.postDist | Function to compute the CPs posterior distribution for the ARTIVA network model from the the ouput samples of function ARTIVAsubnet.
cp.shift | Internal ARTIVA Functions
CPposition | Internal ARTIVA Functions
dinvgamma | Internal ARTIVA Functions
drosophila | Drosphila life cycyle time series by Arbeitman et al 2002.
fast.svd | Internal ARTIVA Functions
geneNetworkSummary | Function to
hasSeg | Internal ARTIVA Functions
init | Internal ARTIVA Functions
main | Internal ARTIVA Functions
nsmall.svd | Internal ARTIVA Functions
plotCP.postDist | Function to plot the estimated posterior distribution for the changepoints (CPs) number and position
PlotFunction | Internal ARTIVA Functions
plotSegmentModel.postDist | Internal ARTIVA Functions
positive.svd | Internal ARTIVA Functions
priors | Set of possible priors for the number of changepoints (CPs) or incoming edges.
pseudoinverse | Internal ARTIVA Functions
psmall.svd | Internal ARTIVA Functions
PSRF | Internal ARTIVA Functions
readDataTS | Internal ARTIVA Functions
readInput | Internal ARTIVA Functions
rinvgamma | Internal ARTIVA Functions
sampleBinit | Internal ARTIVA Functions
sampleBxy | Internal ARTIVA Functions
sampleDelta2 | Internal ARTIVA Functions
sampleK | Internal ARTIVA Functions
sampleParms | Internal ARTIVA Functions
sampleSig2 | Internal ARTIVA Functions
segment.update | Internal ARTIVA Functions
segmentModel.postDist | Internal ARTIVA Functions
segPos | Internal ARTIVA Functions
simulatedProfiles | Simulated gene expression profiles dataset.
traceGeneProfiles | Function to plot the gene expression profiles
traceNetworks | Function to plot the network estimated with functions ARTIVAnet or ARTIVAsubnet
updateSigMulti | Internal ARTIVA Functions
yeast | Yeast stress response data