Baseline Correction of Spectra


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Documentation for package ‘baseline’ version 1.2-1

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baseline-package Baseline correction
algorithm Extraction methods for "baselineAlgTest" objects
algorithm-method Extraction methods for "baselineAlgTest" objects
algorithm-methods Extraction methods for "baselineAlgTest" objects
baseline Baseline correction
baseline-class Class "baseline"
baseline.als Asymmetric Least Squares
baseline.fillPeaks Fill peaks
baseline.irls Iterative Restricted Least Squares
baseline.lowpass Low-pass FFT filter
baseline.medianWindow Median window
baseline.modpolyfit Modified polynomial fitting
baseline.peakDetection Simultaneous Peak Detection and Baseline Correction
baseline.rfbaseline Robust Baseline Estimation
baseline.rollingBall Rolling ball
baseline.shirley Shirley Background Estimation
baselineAlg-class Class "baselineAlg"
baselineAlgorithms List of available baseline algorithms
baselineAlgorithmsGUI List of available baseline algorithms for GUI function
baselineAlgResult-class Class "baselineAlgResult"
baselineAlgTest-class Class "baselineAlgTest"
baselineEnv Baseline environment
baselineGUI Interactive plotting tool
C1s XPS core line data
custom.baseline Customized baseline correction
description Extraction methods for "baselineAlg" objects
description-method Extraction methods for "baselineAlg" objects
description-methods Extraction methods for "baselineAlg" objects
doOptim Optimise several baseline algorithms on a data set
extraArgs Extraction methods for "baselineAlgTest" objects
extraArgs-method Extraction methods for "baselineAlgTest" objects
extraArgs-methods Extraction methods for "baselineAlgTest" objects
funcName Extract the "funcName" slot.
funcName-method Extract the "funcName" slot.
funcName-methods Extract the "funcName" slot.
getBaseline Functions to extract the components of a "baseline" object
getBaseline-method Class "baseline"
getBaselineEnv Baseline environment
getCall Functions to extract the components of a "baseline" object
getCall-method Class "baseline"
getCorrected Functions to extract the components of a "baseline" object
getCorrected-method Class "baseline"
getOptim Visual tool for setting up optimization
getOptimRes Visual tool for setting up optimization
getSpectra Functions to extract the components of a "baseline" object
getSpectra-method Class "baseline"
ind.min Extraction methods specific for "predictionResult" objects
ind.min-method Extraction methods specific for "predictionResult" objects
ind.min-methods Extraction methods specific for "predictionResult" objects
milk MALDI-TOF mass spectra
minQualMeas Extraction functions for "predictionResult" or "baselineAlgResult" objects
minQualMeas-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
minQualMeas-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
mvrValstats Optimise several baseline algorithms on a data set
name Extraction methods for "baselineAlg" objects
name-method Extraction methods for "baselineAlg" objects
name-methods Extraction methods for "baselineAlg" objects
O1s XPS core line data
optimWizard Visual tool for setting up optimization
overall.min Extract the minimum from a baseline optimisation
param Extract the "param" slot
param-method Extract the "param" slot
param-methods Extract the "param" slot
param.ind.min Extraction methods for "baselineAlgResult" objects
param.ind.min-method Extraction methods for "baselineAlgResult" objects
param.ind.min-methods Extraction methods for "baselineAlgResult" objects
param.min Extraction functions for "predictionResult" or "baselineAlgResult" objects
param.min-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
param.min-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
paramName Extraction methods specific for "predictionResult" objects
paramName-method Extraction methods specific for "predictionResult" objects
paramName-methods Extraction methods specific for "predictionResult" objects
plot-method Plot method for "baseline" objects
plotBaseline Plot method for "baseline" objects
plotOptim Plotting tool for result objects from optimization
PLSRTest-class Class "PLSRTest"
predictionResult-class Class "predictionResult"
predictionTest-class Class "predictionTest"
putBaselineEnv Baseline environment
qualMeas Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeas.ind.min Extraction methods for "baselineAlgResult" objects
qualMeas.ind.min-method Extraction methods for "baselineAlgResult" objects
qualMeas.ind.min-methods Extraction methods for "baselineAlgResult" objects
qualMeasName Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeasName-method Extraction functions for "predictionResult" or "baselineAlgResult" objects
qualMeasName-methods Extraction functions for "predictionResult" or "baselineAlgResult" objects
ridgeRegressionTest-class Class "ridgeRegressionTest"
runTest Run a predictionTest or baselineAlgTest
runTest-method Run a predictionTest or baselineAlgTest
runTest-methods Run a predictionTest or baselineAlgTest