Yeast.Biogrid.data {bionetdata} | R Documentation

## Yeast BioGRID data

### Description

Protein-protein interaction (PPI) data (BioGRID) of yeast have been downloaded from the BioGRID database, that collects PPI data from both high-throughput studies and conventional focused studies (Stark et al. 2006). Data are represented through a binary named matrix and represent the presence or absence of protein-protein interactions. Names correspond to systematic names of yeast genes.

### Usage

    data(Yeast.Biogrid.data)

### Format

Binary named matrix. Entry `Yeast.Biogrid.data[i,j] = 1` if there is an interaction between gene i and j, otherwise `Yeast.Biogrid.data[i,j] = 0`.

### Source

BioGRID data base: http://thebiogrid.org

### References

Stark, C., Breitkreutz, B., Reguly, T., Boucher, L., Breitkreutz, A., and Tyers, M. (2006). BioGRID: a general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.

### Examples

    data(Yeast.Biogrid.data);
    Yeast.Biogrid.data[1:10,1:5];

[Package bionetdata version 1.0.1 Index]