class.BisXP {BisRNA} | R Documentation |
class.BisXP
creates a BisXP object from a table containing RNA name,
C position, bisulfite non-conversion ratio and adjusted p-value.
class.BisXP(BisData)
BisData |
A data frame with 4 columns:
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This function takes bisulfite experiment data as an input table, performs checks, and casts the table into a BisXP object, with rows labelled after a RNA_C.position pattern.
If the input table is correct, then the output will be a BisXP object corresponding to a consolidated data frame with rows labelled after a RNA_C.position pattern.
RNA <- c("NM_00001","NM_00001","NM_00002") Cpos <- as.integer(c(1,5,1)) ncratio <- c(0.1,0.5,0.3) pv.adj <- c(0.001,0.1,0.3) BSdata <- data.frame(RNA, Cpos, ncratio, pv.adj, stringsAsFactors = FALSE) bsXP <- class.BisXP(BSdata)