# bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes

## Documentation for package ‘bPeaks’ version 1.2

- DESCRIPTION file.

## Help Pages

bPeaks-package | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
baseLineCalc | Function to calculate the average number of reads mapped on each nucleotide in a genome
bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
bPeaksAnalysis | Function to run the entire bPeaks procedure
dataPDR1 | ChIP-seq results (IP and control samples) obtained with the transcription factor Pdr1 in yeast Saccharomyces cerevisiae
dataReading | Function to import sequencing results in R
dataSmoothing | Function to smooth sequencing coverage along a chromosome
peakDetection | Peak calling method, i. e. identification of genomic regions with a high density of sequences (reads)
peakDrawing | Function to draw graphical representations of genomic regions detected using bPeaks methodology
peakLocation | Function to locate detected basic peaks (bPeaks) according to predifined chromosomal features
yeastCDS | Annotations of CDS for different yeast species