# Brain Cell Type Specific Gene Expression Analysis

## Documentation for package ‘BRETIGEA’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BRETIGEA-package | BRETIGEA: BRain cEll Type specIfic Gene Expression Analysis
aba_marker_expression | Normalized FPKM expression data from a subset of the Allen Brain Atlas Aging, Dementia, and TBI study.
aba_pheno_data | Phenotype data from brain samples in the Allen Brain Atlas Aging, Dementia, and TBI study.
adjustBrainCells | Estimate and adjust for brain cell type proportions in bulk expression data.
adjustCells | Adjust for estimated cell type proportions in bulk gene expression data.
brainCells | Estimate brain cell type proportions in bulk expression data with marker genes.
BRETIGEA | BRETIGEA: BRain cEll Type specIfic Gene Expression Analysis
findCells | Find cell type proportions from bulk gene expression data using marker genes.
markers_df_brain | Marker genes estimated from a meta-analysis of brain cell gene expression data from both humans and mice.
markers_df_human_brain | Marker genes estimated from a meta-analysis of brain cell gene expression data from humans only.
markers_df_mouse_brain | Marker genes estimated from a meta-analysis of brain cell gene expression data from mice only.