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@Article{BPV+11,
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@Article{BSA+15,
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@Article{CIR+10,
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@Article{CHN+08,
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@Article{CZL+16,
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@Article{DCH+14,
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@Article{GTM+12,
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@Article{HXS+06,
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@Article{HTP+11,
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@Article{JCF+11,
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@Article{JKMF10,
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@Article{KPB+10,
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@Article{KWA+14,
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@Article{LLL+13,
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  journal   = {Chemical Research in Chinese Universities},
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  year      = {2013},
  number    = {3},
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@Article{MVC+12,
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@Article{MBK+13,
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  journal   = {Molecular \& Cellular Proteomics},
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  year      = {2013},
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@Article{MHG+12,
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@Article{PPH+14,
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  journal   = {Journal of Proteome Research},
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  volume    = {13},
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@Article{PBR+16,
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@Article{RKP+14,
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  journal   = {Proteome Science},
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@Article{RHD+13,
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  journal   = {Molecular \& Cellular Proteomics},
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  year      = {2013},
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@Article{STK+15,
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@Article{SRS+13,
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@Article{SHHS11,
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@Article{SRG+10,
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  journal   = {Journal of Proteome Research},
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@Article{UNS+14,
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@Article{WDO+15,
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@Article{WOD+12,
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@Article{KKL+12,
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  journal   = {Journal of Proteomics},
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@Article{KYK+12,
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@Article{XZC+10,
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@Article{PGT+16,
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@Article{WKP+14,
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@Article{NMB+16,
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@Article{ZLH+14,
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@Article{WLL+13,
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@Article{ZYS+10,
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@Article{FWH+13,
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@Article{RSE+16,
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@Article{WRK+14,
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@Article{YLZ+12,
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@Article{LCS16,
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@Article{LRS+14,
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@Article{HWA+16,
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@Article{PHL+16,
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@Article{LPL+16,
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@Article{LXM+16,
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  year      = {2016},
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@Article{MCZ+13,
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@Article{KKC+16,
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@Article{IWT+16,
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@Article{CBW+11,
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@Article{HHH+16,
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@Article{PTD+10,
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@Article{VTMF13,
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@Article{DYL+14,
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  journal   = {Molecular \& Cellular Proteomics},
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@Article{YLL+12,
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  journal   = {Journal of Biomedicine and Biotechnology},
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@Article{BRA+10,
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@Article{ISI+14,
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  journal   = {Proteomics},
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  doi       = {10.1002/pmic.201300402},
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@Article{MLC+11,
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  number    = {1},
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@Article{PCS+11,
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@Article{CTZ+09,
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  journal   = {Pancreatology},
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  year      = {2009},
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@Article{CGB+05,
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  journal   = {Gastroenterology},
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  volume    = {129},
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@Article{KBK+12,
  author    = {Kojima, Kyoko and Bowersock, Gregory J. and Kojima, Chinatsu and Klug, Christopher A. and Grizzle, William E. and Mobley, James A.},
  journal   = {Proteomics},
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  volume    = {12},
  doi       = {10.1002/pmic.201100663},
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@Article{KPC+13,
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  journal   = {Molecular \& Cellular Proteomics},
  title     = {{L}aminin, gamma 2 ({LAMC}2): {A} promising new putative pancreatic cancer biomarker identified by proteomic analysis of pancreatic adenocarcinoma tissues},
  year      = {2013},
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  volume    = {12},
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@Article{ZNWL13,
  author    = {Zhu, Jianhui and Nie, Song and Wu, Jing and Lubman, David M.},
  journal   = {Journal of Proteome Research},
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  volume    = {12},
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@Article{PKB+13,
  author    = {Paulo, Joao A. and Kadiyala, Vivek and Brizard, Scott and Banks, Peter A. and Steen, Hanno and Conwell, Darwin L.},
  journal   = {Journal of the Pancreas},
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  year      = {2013},
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@Article{CYD+05,
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  journal   = {Gastroenterology},
  title     = {{P}ancreatic cancer proteome: {T}he proteins that underlie invasion, metastasis, and immunologic escape},
  year      = {2005},
  number    = {4},
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  doi       = {10.1053/j.gastro.2005.08.001},
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@Article{KHO+13,
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  journal   = {PLOS One},
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  year      = {2013},
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  volume    = {8},
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@Article{TMW+11,
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  journal   = {Journal of Proteome Research},
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  volume    = {10},
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@Article{CBP+07,
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  volume    = {6},
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@Article{LHE+04,
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  journal   = {Proteomics},
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@Article{KKG+12,
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  journal       = {Molecular \& Cellular Proteomics},
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  year          = {2012},
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  number        = {1},
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@Article{PW08,
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  journal   = {Journal of Proteome Research},
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  volume    = {7},
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@Article{YDZ+15,
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@Article{DAA+05,
  author    = {Dihazi, Hassan and Asif, Abdul R. and Agarwal, Nitin K. and Doncheva, Yuliana and Müller, Gerhard A.},
  journal   = {Molecular \& Cellular Proteomics},
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@Article{GSC14,
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@Article{CCC+12,
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@Article{CCCC13,
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  year      = {2013},
  number    = {11},
  pages     = {1889--1910},
  volume    = {24},
  doi       = {10.1016/j.jnutbio.2013.05.006},
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@Article{LDB+15,
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@Article{WCM+09,
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@Article{OBBH11,
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@Article{CLG+15,
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  journal   = {Journal of Proteome Research},
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  year      = {2015},
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  volume    = {14},
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@Article{KLB+15,
  author    = {Kohler, Christian and Louren\c{c}o, Rog\'erio F. and Bernhardt, J\"org and Albrecht, Dirk and Sch\"uler, Julia and Hecker, Michael and Gomes, Suely L.},
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  year      = {2015},
  number    = {1},
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  volume    = {15},
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@Article{LRB+09,
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@Article{YCC+17,
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@Article{LLC+19,
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@Article{MAN+18,
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@Article{LAJ+18,
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@Article{LLY+14,
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@Article{TLB+16,
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@Article{WTG+18,
  author    = {Holly M. Wobma and Manuel A. Tamargo and Shahar Goeta and Lewis M. Brown and Raimon Duran-Struuck and Gordana Vunjak-Novakovic},
  journal   = {Biomaterials},
  title     = {{T}he influence of hypoxia and {IFN}-$\gamma$ on the proteome and metabolome of therapeutic mesenchymal stem cells},
  year      = {2018},
  pages     = {226--234},
  volume    = {167},
  doi       = {10.1016/j.biomaterials.2018.03.027},
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@Article{PDT+19,
  author    = {Park, Jung Eun and Dutta, Bamaprasad and Tse, Shun Wilford and Gupta, Nikhil and Tan, Chee Fan and Low, Jee Keem and Yeoh, Kheng Wei and Kon, Oi Lian and Tam, James P. and Sze, Siu Kwan},
  journal   = {Oncogene},
  title     = {{H}ypoxia-induced tumor exosomes promote {M}2-like macrophage polarization of infiltrating myeloid cells and micro{RNA}-mediated metabolic shift},
  year      = {2019},
  pages     = {5158--5173},
  volume    = {38},
  doi       = {10.1038/s41388-019-0782-x},
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@Article{NJVS19,
  author    = {Najgebauer, Hanna and Jarnuczak, Andrew F. and Varro, Andrea and Sanderson, Christopher M.},
  journal   = {Cancers},
  title     = {{I}ntegrative omic profiling reveals unique hypoxia induced signatures in gastric cancer associated myofibroblasts},
  year      = {2019},
  number    = {2},
  pages     = {263},
  volume    = {11},
  doi       = {10.3390/cancers11020263},
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@Article{CLY+18,
  author    = {Chen, Jeng-Ting and Liu, Chien-Chun and Yu, Jau-Song and Li, Hung-Hsuan and Lai, Ming-Chih},
  journal   = {Journal of Proteomics},
  title     = {{I}ntegrated omics profiling identifies hypoxia-regulated genes in {HCT}116 colon cancer cells},
  year      = {2018},
  pages     = {139--151},
  volume    = {188},
  doi       = {10.1016/j.jprot.2018.02.031},
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@Article{ZXS+17,
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  journal   = {Molecular \& Cellular Proteomics},
  title     = {{P}roteome analysis of hypoxic glioblastoma cells reveals sequential metabolic adaptation of one-carbon metabolic pathways},
  year      = {2017},
  number    = {11},
  pages     = {1906--1921},
  volume    = {16},
  doi       = {10.1074/mcp.RA117.000154},
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@Article{CGH+17,
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  journal   = {Journal of Proteome Research},
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  pages     = {2836--2847},
  volume    = {16},
  doi       = {10.1021/acs.jproteome.7b00144},
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@Article{SRS+13a,
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@Article{CRS+15,
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@Article{CZD+14,
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  number    = {5},
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  volume    = {306},
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@Article{QMB+17,
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  journal   = {Clinical Proteomics},
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  year      = {2017},
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  volume    = {14},
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@Article{NKG+17,
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  journal   = {Clinica Chimica Acta},
  title     = {{I}mmunohistochemical expression analysis of leucine-rich {PPR}-motif-containing protein ({LRPPRC}), a candidate colorectal cancer biomarker identified by shotgun proteomics using i{TRAQ}},
  year      = {2017},
  pages     = {276--282},
  volume    = {471},
  doi       = {10.1016/j.cca.2017.06.011},
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@Article{ZLY+17,
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@Article{BHB+15,
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@Article{BZQ+14,
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@Article{WLC+17,
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  doi       = {10.18632/oncotarget.18547},
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@Article{ZZD+12,
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@Article{ZZY+13,
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  journal   = {Oncology Reports},
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@Article{MZH+14,
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  journal   = {Molecular \& Cellular Proteomics},
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  pages     = {3484--3496},
  volume    = {13},
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@Article{GWS+17,
  author    = {Gao, Yanyan and Wang, Xinzheng and Sang, Zhihong and Li, Zongcheng and Liu, Feng and Mao, Jie and Yan, Dan and Zhao, Yongqiang and Wang, Hongli and Li, Ping and Ying, Xiaomin and Zhang, Xuemin and He, Kun and Wang, Hongxia},
  journal   = {Scientific Reports},
  title     = {Quantitative proteomics by {SWATH}-{MS} reveals sophisticated metabolic reprogramming in hepatocellular carcinoma tissues},
  year      = {2017},
  pages     = {45913},
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@Article{TMS+17,
  author    = {Tu, Chengjian and Mojica, Wilfrido and Straubinger, Robert M. and Li, Jun and Shen, Shichen and Qu, Miao and Nie, Lei and Roberts, Rick and An, Bo and Qu, Jun},
  journal   = {Proteomics: Clinical Applications},
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  year      = {2017},
  volume    = {11},
  number    = {5-6},
  pages     = {1600155},
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@Article{JSP+19,
  author    = {Jevti\'c, \v{Z}ivojin and Stoll, Britta and Pfeiffer, Friedhelm and Sharma, Kundan and Urlaub, Henning and Marchfelder, Anita and Lenz, Christof},
  journal   = {Proteomics},
  title     = {{T}he response of \emph{{H}aloferax volcanii} to salt and temperature stress: {A} proteome study by label-free mass spectrometry},
  year      = {2019},
  number    = {20},
  pages     = {1800491},
  volume    = {19},
  doi       = {10.1002/pmic.201800491},
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@Article{KAK+17,
  author    = {Gurjeet Kaur and Syed Azmal Ali and Sudarshan Kumar and Ashok Kumar Mohanty and Pradip Behare},
  journal   = {Journal of Proteomics},
  title     = {{L}abel-free quantitative proteomic analysis of \emph{{L}actobacillus fermentum} {NCDC} 400 during bile salt exposure},
  year      = {2017},
  pages     = {36--45},
  volume    = {167},
  doi       = {10.1016/j.jprot.2017.08.008},
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@Article{LJC+18,
  author    = {Taewon Lee and So Hyun Jun and Chi Won Choi and Seung Il Kim and Je Chul Lee and Ji Hyun Shin},
  journal   = {Microbial Pathogenesis},
  title     = {{S}alt stress affects global protein expression profiles of extracellular membrane-derived vesicles of \emph{{L}isteria monocytogenes}},
  year      = {2018},
  pages     = {272--279},
  volume    = {115},
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@Article{LLYL17,
  author    = {Jieting Lin and Hebin Liang and Junwei Yan and Lixin Luo},
  journal   = {Journal of Proteomics},
  title     = {{T}he molecular mechanism and post-transcriptional regulation characteristic of \emph{{T}etragenococcus halophilus} acclimation to osmotic stress revealed by quantitative proteomics},
  year      = {2017},
  pages     = {1--14},
  volume    = {168},
  doi       = {10.1016/j.jprot.2017.08.014},
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@Article{LYS+17,
  author    = {Long-Xian Lv and Ren Yan and Hai-Yan Shi and Ding Shi and Dai-Qiong Fang and Hui-Yong Jiang and Wen-Rui Wu and Fei-Fei Guo and Xia-Wei Jiang and Si-Lan Gu and Yun-Bo Chen and Jian Yao and Lan-Juan Li},
  journal   = {Journal of Proteomics},
  title     = {{I}ntegrated transcriptomic and proteomic analysis of the bile stress response in probiotic \emph{{L}actobacillus salivarius} {LI}01},
  year      = {2017},
  pages     = {216--229},
  volume    = {150},
  doi       = {10.1016/j.jprot.2016.08.021},
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@Article{GCS+19,
  author    = {Talita Helen Bombardelli Gomig and Iglenir João Cavalli and Ricardo Lehtonen Rodrigues de Souza and Aline Castro Rodrigues Lucena and Michel Batista and Kelly Cavalcanti Machado and Fabricio Klerynton Marchini and Fabio Albuquerque Marchi and Rubens Silveira Lima and Cícero de Andrade Urban and Luciane Regina Cavalli and Enilze Maria de Souza Fonseca Ribeiro},
  journal   = {Data in Brief},
  title     = {{H}igh-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data},
  year      = {2019},
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  volume    = {25},
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@Article{SWW+18,
  author    = {Yang Song and Qing Wang and Desheng Wang and Junqiang Li and Jing Yang and Hong Li and Xiang Wang and Xuerong Jin and Ruirui Jing and Jing-Hua Yang and Haichuan Su},
  journal   = {Translational Oncology},
  title     = {{L}abel-free quantitative proteomics unravels carboxypeptidases as the novel biomarker in pancreatic ductal adenocarcinoma},
  year      = {2018},
  number    = {3},
  pages     = {691--699},
  volume    = {11},
  doi       = {10.1016/j.tranon.2018.03.005},
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@Article{KJK+18,
  author    = {Kim, Young Eun and Jeon, Hyo Jin and Kim, Dahee and Lee, Sun Young and Kim, Ki Young and Hong, Jongki and Maeng, Pil Jae and Kim, Kwang-Rok and Kang, Dukjin},
  journal   = {Scientific Reports},
  title     = {{Q}uantitative proteomic analysis of 2{D} and 3{D} cultured colorectal cancer cells: {P}rofiling of tankyrase inhibitor {XAV}939-induced proteome},
  year      = {2018},
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  volume    = {8},
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@Article{LKK+18,
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@Article{CSK+19,
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@Article{JVC+12,
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@Article{ZAH+19,
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@Article{MMF+20,
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@Article{LPK+19,
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@Article{RTA+15,
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@Article{HKX+14,
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@Article{HLC19,
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@Article{MTK+15,
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  journal   = {Cell},
  title     = {Integrative proteomic characterization of human lung adenocarcinoma},
  year      = {2020},
  number    = {1},
  pages     = {245--261},
  volume    = {182},
  doi       = {10.1016/j.cell.2020.05.043},
}

@Article{LLF+20,
  author    = {Lin, Yuxiang and Lin, Ling and Fu, Fangmeng and Wang, Chuan and Hu, Anqi and Xie, Juanjuan and Jiang, Meichen and Wang, Zhenxin and Yang, Lujie and Guo, Rongrong and Yang, Pengyuan and Shen, Huali},
  journal   = {Breast Cancer Research and Treatment},
  title     = {Quantitative proteomics reveals stage-specific protein regulation of triple negative breast cancer},
  year      = {2020},
  doi       = {10.1007/s10549-020-05916-8},
}

@Article{ZZX+20,
  author    = {Tiansheng Zhu and Yi Zhu and Yue Xuan and Huanhuan Gao and Xue Cai and Sander R. Piersma and Thang V. Pham and Tim Schelfhorst and Richard R.G.D. Haas and Irene V. Bijnsdorp and Rui Sun and Liang Yue and Guan Ruan and Qiushi Zhang and Mo Hu and Yue Zhou and Winan J. {Van Houdt} and Tessa Y.S. {Le Large} and Jacqueline Cloos and Anna Wojtuszkiewicz and Danijela Koppers-Lalic and Franziska Böttger and Chantal Scheepbouwer and Ruud H. Brakenhoff and Geert J.L.H. {van Leenders} and Jan N.M. Ijzermans and John W.M. Martens and Renske D.M. Steenbergen and Nicole C. Grieken and Sathiyamoorthy Selvarajan and Sangeeta Mantoo and Sze S. Lee and Serene J.Y. Yeow and Syed M.F. Alkaff and Nan Xiang and Yaoting Sun and Xiao Yi and Shaozheng Dai and Wei Liu and Tian Lu and Zhicheng Wu and Xiao Liang and Man Wang and Yingkuan Shao and Xi Zheng and Kailun Xu and Qin Yang and Yifan Meng and Cong Lu and Jiang Zhu and Jin'e Zheng and Bo Wang and Sai Lou and Yibei Dai and Chao Xu and Chenhuan Yu and Huazhong Ying and Tony K. Lim and Jianmin Wu and Xiaofei Gao and Zhongzhi Luan and Xiaodong Teng and Peng Wu and Shi'ang Huang and Zhihua Tao and Narayanan G. Iyer and Shuigeng Zhou and Wenguang Shao and Henry Lam and Ding Ma and Jiafu Ji and Oi L. Kon and Shu Zheng and Ruedi Aebersold and Connie R. Jimenez and Tiannan Guo},
  journal   = {Genomics, Proteomics \& Bioinformatics},
  title     = {{DPHL}: {A} {DIA} pan-human protein mass spectrometry library for robust biomarker discovery},
  year      = {2020},
  number    = {2},
  pages     = {104--119},
  volume    = {18},
  doi       = {10.1016/j.gpb.2019.11.008},
}
