Validation of Clustering Results


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Documentation for package ‘clValid’ version 0.6-6

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AD Stability Measures
ADM Stability Measures
annotationListToMatrix Change annotation list to matrix
APN Stability Measures
BHI Biological Homogeneity Index
BSI Biological Stability Index
clusterMethods Class "clValid"
clusterMethods-method Class "clValid"
clusters Class "clValid"
clusters-method Class "clValid"
clValid Validate Cluster Results
clValid-class Class "clValid"
clValidObj Class "clValid"
connectivity Connectivity Measure
dunn Dunn Index
FOM Stability Measures
getRanksWeights Extract ranks and weights from clValid object
measNames Class "clValid"
measNames-method Class "clValid"
measures Class "clValid"
measures-method Class "clValid"
mouse Mouse Mesenchymal Cells
nClusters Class "clValid"
nClusters-method Class "clValid"
optimalScores Class "clValid"
optimalScores-method Class "clValid"
plot-method Class "clValid"
plot.sota Plot Function for a SOTA Object
print-method Class "clValid"
print.sota Print Function for a SOTA Object
readAnnotationFile Read in biological annotation files from external file
show-method Class "clValid"
sota Self-organizing Tree Algorithm (SOTA)
stability Stability Measures
summary-method Class "clValid"