Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees

[Up] [Top]

Documentation for package ‘CollessLike’ version 1.0

Help Pages

CollessLike-package Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees
a.g.model Generates a random tree
balance.indices Computes Colles-like, Sackin and cophenetic balance indices of a phylogenetic tree.
colless.like.index Computes the Colless-like balance index of a phylogenetic tree
CollessLike Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees
cophen.index Computes the cophenetic balance index of a phylogenetic tree
distribution Plot the distribution of Colless-Like, Sackin and cophenetic normalized balance indices under the alpha-gamma model and computes the percentile of a tree from previous distributions.
indices.simulation Generates random trees and compute their balance indices
sackin.index Computes the Sackin balance index of a phylogenetic tree