BarabasiAlbert          Function to generate a Barabasi-Albert network
Icelandflu              Monthly incidence of inflenza-like illness in
                        Iceland between 1980 and 2009.
May.app                 Launch a shiny-app simulating May's
                        Parasitoid-host Model model
NB                      The Nicholson-Bailey model
NetworkSIR              Function to simulate an epidemic on a network
SEIR.app                Launch a shiny-app simulating the seasonal SEIR
                        model
SEIRS.app               Launch a shiny-app simulating the SEIRS model
SH9                     Daily measures of malaria infected mice.
SIR.app                 Launch a shiny-app simulating the SIR model
SimTsir                 Function to simulate the stocastic TSIR
SimTsir2                Function to simulate the seasonally-forced TSIR
TSIR.app                Launch a shiny-app simulating TSIR model
TSIRllyap               Function to calculate the local Lyapunov
                        exponents for the TSIR
TSIRlyap                Function to do Lyapunov exponent calculations
                        from a TSIR simulation
WattsStrogatz           Function to generate a Watts-Strogats network
black                   Black's measles seroprevalence data.
burnett                 Burnett's Parasitoid-Host data.
ccs                     UK measles CCS data.
chainSIR                Gradient-function for the chain-SIR model
cholera                 Dacca cholera death data.
coyne                   Gradient-function for Coyne et al's rabies
                        model
dalziel                 Measles incidence across 40 US cities
ebola                   Sierra-Leone Ebola 2015 data.
ferrari                 Ferrari et al. 2005 outbreak data.
filipendula             Filipendula rust data.
fiv                     FIV infection in cats.
flowField               Flow field
flu                     Boarding school influenza data.
gillespie               Gillespie exact algorithm
gm                      Defoliated by gypsy moth each in northeast US
                        1975-2002.
gonnet                  De et al. 2004 gonorhea contact matrix
gra                     Euthamia graminifolia rust data.
integrandpc             Auxillary function used by llik.pc
litter                  Bordetella bronchiseptica in rabbit kittens.
llik.cb                 Negative log-likelihood function for the
                        chain-binomial model
llik.pc                 Function to estimate parameters for the
                        picewise-constant catalytic model
magono                  Massachustets gonorrhea data.
meas                    Bi-weekly measles incidence in London from
                        1944-65.
mossong                 POLYMOD contact-rate data by Age.
niamey                  Weekly measles incidence from 2003-04 in
                        Niamey, Niger.
niamey_daily            Day of appearance of each measles case from
                        2003-04 outbreak in Niamey, Niger.
orv.app                 Launch a shiny-app to study outbreak-response
                        vaccination campaigns
pagiard                 Weekly incidence of giardia in Pennsylvania
                        between 2006 and 2014.
paili                   Weekly deaths from Influenza-like illness in
                        Pennsylvania between 1972 and 1998.
palymes                 Weekly incidence of Lymes disease in
                        Pennsylvania between 2006 and 2014.
pameasle                Weekly incidence of measles in Pennsylvania
                        between 1928 and 1969.
pertcop                 Weekly whooping cough incidence from 1900-1937
                        in Copenhagen, Denmark.
peru                    Rubella in Peru data.
plot.cm                 Function to plot an object of class CM
plot.netSIR             Function to plot a netSIR object
r0fun                   Function to calculate R0 from a contact matrix
rabbit                  Rabbit _Bordetella brochiseptica_ data.
rabies                  Raccoon rabies data.
retrospec               Function to predict efficacy of
                        outbreak-response vaccination campaign
ringlattice             Function to generate a ring lattice
seirmod                 Gradient-function for the SEIR model
seirmod2                Gradient-function for the forced SEIR model
silene2                 Antler smut on wild campion.
sim.cb                  Function to simulate the chain-binomial model
siragemod               Gradient-function for the age-structured SIR
                        model with possibly heterogeneous mixin
sirmod                  Gradient-function for the SIR model
sirwmod                 Gradient-function for the SIRWS model
sivmod                  Gradient-function for the SIR model with
                        outbreak-response vaccination
summary.cm              Function to calculate the degree distribution
                        for an object of class CM
summary.netSIR          Function to summarize a netSIR object
tau                     Gillespie tau-leap algorithm
tydiphtheria            Weekly incidence of diphtheria in Philadelphia
                        between 1914 and 1947.
tymeasles               Weekly incidence of measles in Philadelphia
                        between 1914 and 1947.
tyscarlet               Weekly incidence of scarlet fever in
                        Philadelphia between 1914 and 1947.
tywhooping              Weekly incidence of whooping cough in
                        Philadelphia between 1925 and 1947.
usflu                   US 1975/76 ILI data.
