# Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

## Documentation for package ‘g3viz’ version 1.1.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

g3Lollipop | Render g3lollipop diagram for the given mutation data
g3Lollipop-shiny | Shiny bindings for g3Lollipop
g3Lollipop.options | G3Lollipop plot options
g3Lollipop.theme | G3Lollipop chart options of built-in themes.
g3LollipopOutput | Shiny bindings for g3Lollipop
getMutationsFromCbioportal | Query cancer genomic mutation data from cBioPortal
guessMAFColumnName | Guess column name for MAF file
hgnc2pfam | Map from Hugo symbol to Pfam domains
hgnc2pfam.df | Mapping table between gene.symbol, uniprot.id, and pfam
hgnc2uniprot | Mapping from Hugo symbol to UniProt IDs
mapMutationTypeToMutationClass | Map from mutation type (aka, variant classification) to mutation class
mutation.table.df | Default mapping table between mutation type (aka, variant classification) to mutation class
parseProteinChange | Extract _amino_acid_position_ from _Protein_Change_
readMAF | Read MAF file
renderG3Lollipop | Shiny bindings for g3Lollipop
uniprot2pfam | From UniProt ID to Pfam-A domain composition