Genesys PGR Client


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Documentation for package ‘genesysr’ version 0.9.2

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.check_auth Ensure that environment has OAuth token
.fetch_accessions_page Fetch accession passport data (paginated)
.MAX_ALLOWED_PAGES Max pages to retrieve
.onLoad Configure package defaults on load
.post HTTP POST method
api_url Get full Genesys API URL for a specific path
authorization Provide OAuth2 token to use for authorization with Genesys
client_login Login to Genesys as a service client (system-to-system)
fetch_accessions Fetch accession passport data
filter_DOI Add filter on accession DOI
filter_ORIGCTY Add filter on Country of origin of material
filter_SAMPSTAT Add filter on Biological status of sample
mcpd_filter Make or adjust filter using MCPD terminology
me Who am i?
print_setup Print Genesys client configuration
setup Configure the Genesys environment
setup_production Setup for Genesys Production
setup_sandbox Setup for Genesys Sandbox
user_login Login to Genesys as a user