# A geometrical Approach to Differential expression and gene-set enrichment

## Documentation for package ‘GeoDE’ version 1.0

- DESCRIPTION file.

## Help Pages

GeoDE-package | Differential Expression and Enrichment Analysis with (Geo)metrical(D)ifferential(E)expression.
AllGMTfiles | The gmt files included in GeoDE
chdirAnalysis | A Function to Perform Characteristic Direction Analysis.
example_expression_data | Example Expression Data
example_gammas | Example Gamma Value
example_sampleclass | Example Sample Class Factor
GeoDE | Differential Expression and Enrichment Analysis with (Geo)metrical(D)ifferential(E)expression.
gmt | The currently loaded gmtfile
multigmtPAEAAnalysis | A Function to Evaluate Gene-Set Enrichment Using PAEA Over Multiple GMT Files.
PAEAAnalysis | A Function to Evaluate Gene-Set Enrichment Using PAEA.