# Integrative clustering of multiple genomic data types

## Documentation for package ‘iCluster’ version 2.1.0

- DESCRIPTION file.
- Code demos. Use demo() to run them.

## Help Pages

breast.chr17 | Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
compute.pod | A function to compute the proportion of deviation from perfect block diagonal matrix
coord | genomic coordinates
gbm | GBM data
glp | good lattice points using the uniform design
iCluster | Integrative clustering of multiple genomic data types
iCluster2 | A variant of the iCluster method with variance weighted shrinkage
plotHeatmap | A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster | A function to generate cluster separability matrix plot.
plotRI | A function to generate reproducibility index plot.
simu.datasets | simulated dataset.
tune.iCluster2 | Model tuning function