Idiograms with Marks and Karyotype Indices


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Documentation for package ‘idiogramFISH’ version 1.0.0

Help Pages

armRatioCI Function to calculate Arm Ratio and C.I. and categorical morphologies
asymmetry Function to calculate karyotype asymmetry A and A2
asymmetryA2 Function to calculate karyotype asymmetry
bigdfChrSizeHolo Example data for holocentrics for several species
bigdfDataCen Example data for centromeric marks df with column OTU
bigdfMarkPosHolo Example data for mark position of holocentrics with column OTU
bigdfOfChrSize Example data for monocentrics for several species
bigdfOfMarks Example data for mark position of monocentrics with column OTU
checkNameChrDfMarks Function to check names of OTUs (species) among dataframes
checkNameOTUdfMarks Function to check names of chromosomes among dataframes
dfChrSizeHolo Example data for holocentrics for 1 species
dfMarkColor Example General data for marks
dfMarkPosHolo Example data for mark position of holocentrics
dfOfCenMarks Example data for centromeric marks of monocentrics
dfOfChrSize Example data for monocentrics for several species
dfOfMarks Example data for mark position of monocentrics
plotIdiograms Function to plot idiograms of karyotypes with centromere
plotIdiogramsHolo Function to plot idiograms without centromere