Shiny App. Idiograms with Marks and Karyotype Indices


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Documentation for package ‘idiogramFISH’ version 2.0.8

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allChrSizeSample Chr. basic data Monocen.
allMarksSample Mark Positional data - monocentrics
armRatioCI FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.
asymmetry FUNCTIONS asymmetry and asymmetryA2.
asymmetryA2 FUNCTIONS asymmetry and asymmetryA2.
bigdfChrSizeHolo Chr. basic data Holo.
bigdfMarkPosHolo Mark Positional data - Holocen.
bigdfMarkPosHolo2 Mark Positional data - Holocen.
bigdfOfChrSize Chr. basic data Monocen.
bigdfOfChrSize3Mb Chr. basic data Holo.
bigdfOfMarks Mark Positional data - monocentrics
bigdfOfMarks3Mb Mark Positional data - Holocen.
chrbasicdataHolo Chr. basic data Holo.
chrbasicdatamono Chr. basic data Monocen.
citrusMarkPos FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA
citrusSize FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA
dfAlloParentMarks Mark Positional data - monocentrics
dfAlloParentMarksHolo Mark Positional data - Holocen.
dfChrSizeHolo Chr. basic data Holo.
dfMarkColor Mark characteristics
dfMarkColor5S25S Mark characteristics
dfMarkColorIn Mark characteristics
dfMarkPosHolo Mark Positional data - Holocen.
dfMarkStyle Mark characteristics
dfOfChrSize Chr. basic data Monocen.
dfOfMarks Mark Positional data - monocentrics
dfOfMarks2 Mark Positional data - monocentrics
fillMarkInfo FUNCTION posCalc and fillMarkInfo
fillMarkInfo2 FUNCTION posCalc and fillMarkInfo
genBankReadIF FUNCTION genBankReadIF
humChr Chr. basic data Monocen.
humMarkColor Mark characteristics
humMarkPos Mark Positional data - monocentrics
make.uniqueIF FUNCTION make.uniqueIF
makedfMarkColorMycolors FUNCTION to make a data.frame of Marks' characterisitcs
mapGGChr FUNCTIONS mapGGChr and mapGGChrMark (for ggplot)
mapGGChrMark FUNCTIONS mapGGChr and mapGGChrMark (for ggplot)
markdataholo Mark Positional data - Holocen.
markOverCMA FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA
markposDFs Mark Positional data - monocentrics
mydfMaColor Mark characteristics
namesToColumns FUNCTION that modifies marks' names into columns
parentalAndHybChrSize Chr. basic data Monocen.
parentalAndHybHoloChrSize Chr. basic data Holo.
perMark FUNCTION perMark
plotIdiograms FUNCTION to plot idiograms of karyotypes with and without centromere
posCalc FUNCTION posCalc and fillMarkInfo
robert FUNCTION to produce a Robertsonian translocation
runBoard FUNCTION runBoard
swapChrRegionDfSizeAndMarks FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks.
traspadf Chr. basic data Monocen.
traspaMarks Mark Positional data - monocentrics