# Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes

## Documentation for package ‘LEANR’ version 1.4.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

LEAN-package | Finds "local subnetworks" within an interaction network which show enrichment for differentially expressed genes
CCM.pvals | Gene p-value list derived from knock-out experiments of the three CCM genes
g2 | igraph graph object used in examples for function run.lean.fromdata
gene.annots | Annotation for STRING protein Ids
gene.list.scores | Gene p-value list used in examples for function run.lean.fromdata
get.ls.info | Extract the genes of a "local subnetwork"" around a given protein
g_red | igraph graph object used in unit tests
LEAN | Finds "local subnetworks" within an interaction network which show enrichment for differentially expressed genes
lean | Run the LEAN approach
LEANR | Finds "local subnetworks" within an interaction network which show enrichment for differentially expressed genes
Local enrichement analysis | Finds "local subnetworks" within an interaction network which show enrichment for differentially expressed genes
local.subnetwork.export | Extract the "local subnetwork" around a given protein
local.subnetwork.info | Extract the genes of a "local subnetwork"" around a given protein
pvals_red | Gene p-value list used in unit tests
run.lean | Run the LEAN approach
subnet.simulation | Simulate subnetworks
write.ls.to.sif | Extract the "local subnetwork" around a given protein