$,MapCollection-method	MapCollection-class
$,MapSet-method	SpeciesMaps-class
+,MapCollection,MapCollection-method	MapCollection-class
+,MapCollection,MapSet-method	MapCollection-class
+,MapCollection,MareyMap-method	MapCollection-class
+,MapSet,MareyMap-method	SpeciesMaps-class
+,MareyMap,Interpolation-method	MareyMap-class
-,MapCollection,character-method	MapCollection-class
-,MapSet,character-method	SpeciesMaps-class
Arabidopsis_thaliana	Arabidopsis_thaliana
argList	argList-methods
argList,Interpolation-method	Interpolation-class
argList-methods	argList-methods
Caenorhabditis_elegans	Caenorhabditis_elegans
coerce,data.frame,MareyMap-method	MareyMap-class
coerce,MapCollection,data.frame-method	MapCollection-class
coerce,MapSet,data.frame-method	SpeciesMaps-class
coerce,MareyMap,data.frame-method	MareyMap-class
coerce,MareyMap,NULL-method	MareyMap-class
color	color-methods
color,Interpolation-method	Interpolation-class
color-methods	color-methods
color<-	color-methods
color<-,Interpolation-method	Interpolation-class
color<--methods	color-methods
createOrder	createOrder-methods
createOrder,MMLoess-method	MMLoess-class
createOrder,MMSlidingWindow-method	MMSlidingWindow-class
createOrder,MMSpline3-method	MMSpline3-class
createOrder-methods	createOrder-methods
degree	MMLoess-class
degree,MMLoess-method	MMLoess-class
degree<-	MMLoess-class
degree<-,MMLoess-method	MMLoess-class
df	MMSpline3-class
df,MMSpline3-method	MMSpline3-class
df<-	MMSpline3-class
df<-,MMSpline3,numeric-method	MMSpline3-class
Drosophila_melanogaster	Drosophila_melanogaster
gcv	MMSpline3-class
gcv,MMSpline3-method	MMSpline3-class
gcv<-	MMSpline3-class
gcv<-,MMSpline3,logical-method	MMSpline3-class
geneticDistances	geneticDistances-methods
geneticDistances,MareyMap-method	MareyMap-class
geneticDistances-methods	geneticDistances-methods
geneticDistances<-	geneticDistances-methods
geneticDistances<-,MareyMap-method	MareyMap-class
geneticDistances<--methods	geneticDistances-methods
getInterList	getInterList-methods
getInterList,missing-method	getInterList-methods
getInterList-methods	getInterList-methods
Homo_sapiens_female	Homo_sapiens
Homo_sapiens_male	Homo_sapiens
Homo_sapiens_mean	Homo_sapiens
interpolate	interpolate-methods
interpolate,Interpolation,MareyMap-method	Interpolation-class
interpolate,MMLoess,MareyMap-method	MMLoess-class
interpolate,MMSlidingWindow,MareyMap-method	MMSlidingWindow-class
interpolate,MMSpline3,MareyMap-method	MMSpline3-class
interpolate-methods	interpolate-methods
Interpolation	Interpolation-class
interpolation	interpolation-methods
interpolation,MareyMap,character-method	MareyMap-class
Interpolation-class	Interpolation-class
interpolation-methods	interpolation-methods
interpolation<-	interpolation-methods
interpolation<-,MareyMap,character,Interpolation-method	MareyMap-class
interpolation<--methods	interpolation-methods
InterpolationParam	InterpolationParam-class
InterpolationParam,missing-method	InterpolationParam-methods
InterpolationParam-class	InterpolationParam-class
InterpolationParam-methods	InterpolationParam-methods
interpolations	interpolations-methods
interpolations,MareyMap-method	MareyMap-class
interpolations-methods	interpolations-methods
interpolations<-	interpolations-methods
interpolations<-,MareyMap-method	MareyMap-class
interpolations<--methods	interpolations-methods
length,MapCollection-method	MapCollection-class
length,MapSet-method	SpeciesMaps-class
MapCollection	MapCollection-class
MapCollection,missing-method	MapCollection-class
MapCollection-class	MapCollection-class
MapCollection-methods	MapCollection-methods
mapName	mapName-methods
mapName,MareyMap-method	MareyMap-class
mapName-methods	mapName-methods
mapName<-	mapName-methods
mapName<-,MareyMap-method	MareyMap-class
mapName<--methods	mapName-methods
mapNames	mapNames-methods
mapNames,MapSet-method	SpeciesMaps-class
mapNames-methods	mapNames-methods
MapSet	SpeciesMaps-class
MapSet,character-method	SpeciesMaps-methods
MapSet-class	SpeciesMaps-class
MapSet-methods	SpeciesMaps-methods
MareyMap	MareyMap-class
MareyMap,data.frame,ANY,ANY,ANY-method	MareyMap-class
MareyMap,missing,missing,missing,missing-method	MareyMap-methods
MareyMap-class	MareyMap-class
MareyMap-methods	MareyMap-methods
markerNames	markerNames-methods
markerNames,MareyMap-method	MareyMap-class
markerNames-methods	markerNames-methods
markerNames<-	markerNames-methods
markerNames<-,MareyMap-method	MareyMap-class
markerNames<--methods	markerNames-methods
markerValidity	markerValidity-methods
markerValidity,MareyMap-method	MareyMap-class
markerValidity-methods	markerValidity-methods
markerValidity<-	markerValidity-methods
markerValidity<-,MareyMap-method	MareyMap-class
markerValidity<--methods	markerValidity-methods
MMLoess	MMLoess-class
MMLoess,missing-method	MMLoess-class
MMLoess-class	MMLoess-class
MMLoess-methods	MMLoess-class
MMSlidingWindow	MMSlidingWindow-class
MMSlidingWindow,missing-method	MMSlidingWindow-class
MMSlidingWindow-class	MMSlidingWindow-class
MMSlidingWindow-methods	MMSlidingWindow-class
MMSpline3	MMSpline3-class
MMSpline3,missing-method	MMSpline3-class
MMSpline3-class	MMSpline3-class
MMSpline3-methods	MMSpline3-class
name	name-Methods
name,Interpolation-method	Interpolation-class
name-methods	name-Methods
name<-	name-Methods
name<-,Interpolation-method	Interpolation-class
name<--methods	name-Methods
paramDefault	paramDefault-methods
paramDefault,InterpolationParam-method	InterpolationParam-class
paramDefault-methods	paramDefault-methods
paramDefault<-	paramDefault-methods
paramDefault<-,InterpolationParam-method	InterpolationParam-class
paramDefault<--methods	paramDefault-methods
paramDesc	paramDesc-methods
paramDesc,InterpolationParam-method	InterpolationParam-class
paramDesc-methods	paramDesc-methods
paramDesc<-	paramDesc-methods
paramDesc<-,InterpolationParam,character-method	InterpolationParam-class
paramDesc<--methods	paramDesc-methods
paramFun	paramFun-methods
paramFun,InterpolationParam-method	InterpolationParam-class
paramFun-methods	paramFun-methods
paramFun<-	paramFun-methods
paramFun<-,InterpolationParam,character-method	InterpolationParam-class
paramFun<--methods	paramFun-methods
paramMax	paramMax-methods
paramMax,InterpolationParam-method	InterpolationParam-class
paramMax-methods	paramMax-methods
paramMax<-	paramMax-methods
paramMax<-,InterpolationParam-method	InterpolationParam-class
paramMax<--methods	paramMax-methods
paramMin	paramMin-methods
paramMin,InterpolationParam-method	InterpolationParam-class
paramMin-methods	paramMin-methods
paramMin<-	paramMin-methods
paramMin<-,InterpolationParam-method	InterpolationParam-class
paramMin<--methods	paramMin-methods
paramName	paramName-methods
paramName,InterpolationParam-method	InterpolationParam-class
paramName-methods	paramName-methods
paramName<-	paramName-methods
paramName<-,InterpolationParam,character-method	InterpolationParam-class
paramName<--methods	paramName-methods
paramType	paramType-methods
paramType,InterpolationParam-method	InterpolationParam-class
paramType-methods	paramType-methods
paramType<-	paramType-methods
paramType<-,InterpolationParam,character-method	InterpolationParam-class
paramType<--methods	paramType-methods
paramValues	paramValues-methods
paramValues,InterpolationParam-method	InterpolationParam-class
paramValues-methods	paramValues-methods
paramValues<-	paramValues-methods
paramValues<-,InterpolationParam,vector-method	InterpolationParam-class
paramValues<--methods	paramValues-methods
persistent	persistent-methods
persistent,Interpolation-method	Interpolation-class
persistent-methods	persistent-methods
persistent<-	persistent-methods
persistent<-,Interpolation-method	Interpolation-class
persistent<--methods	persistent-methods
physicalPositions	physicalPositions-methods
physicalPositions,MareyMap-method	MareyMap-class
physicalPositions-methods	physicalPositions-methods
physicalPositions<-	physicalPositions-methods
physicalPositions<-,MareyMap-method	MareyMap-class
physicalPositions<--methods	physicalPositions-methods
plot,MareyMap,Interpolation-method	Interpolation-class
plot,MareyMap,missing-method	MareyMap-class
plot,MareyMap,MMLoess-method	MMLoess-class
plot,MareyMap,MMSlidingWindow-method	MMSlidingWindow-class
plot,MareyMap,MMSpline3-method	MMSpline3-class
plotMarkers	plotMarkers-methods
plotMarkers,MareyMap-method	MareyMap-class
plotMarkers-methods	plotMarkers-methods
plotModel	plotModel-methods
plotModel,Interpolation-method	Interpolation-class
plotModel,MMLoess-method	MMLoess-class
plotModel,MMSlidingWindow-method	MMSlidingWindow-class
plotModel,MMSpline3-method	MMSpline3-class
plotModel-methods	plotModel-methods
plotModels	plotModels-methods
plotModels,MareyMap-method	MareyMap-class
plotModels-methods	plotModels-methods
plotRate	plotRate-methods
plotRate,Interpolation-method	Interpolation-class
plotRate,MMLoess-method	MMLoess-class
plotRate,MMSlidingWindow-method	MMSlidingWindow-class
plotRate,MMSpline3-method	MMSpline3-class
plotRate-methods	plotRate-methods
plotRates	plotRates-methods
plotRates,MareyMap-method	MareyMap-class
plotRates-methods	plotRates-methods
query	query-methods
query,Interpolation,integer-method	Interpolation-class
query,Interpolation,numeric-method	Interpolation-class
query,MareyMap,numeric-method	MareyMap-class
query,MMLoess,numeric-method	MMLoess-class
query,MMSlidingWindow,numeric-method	MMSlidingWindow-class
query,MMSpline3,numeric-method	MMSpline3-class
query-methods	query-methods
rates	rates-methods
rates,Interpolation-method	Interpolation-class
rates-methods	rates-methods
rates<-	rates-methods
rates<-,Interpolation-method	Interpolation-class
rates<--methods	rates-methods
registerInterpolationMethod	registerInterpolationMethod-methods
registerInterpolationMethod,character,character-method	registerInterpolationMethod-methods
registerInterpolationMethod-methods	registerInterpolationMethod-methods
removeMarker	removeMarker-methods
removeMarker,MareyMap,integer-method	MareyMap-class
removeMarker-methods	removeMarker-methods
setName	speciesName-methods
setName,MapSet-method	SpeciesMaps-class
setName,MareyMap-method	MareyMap-class
setName-methods	speciesName-methods
setName<-	speciesName-methods
setName<-,MapSet,character-method	SpeciesMaps-class
setName<-,MareyMap,ANY-method	MareyMap-class
setName<--methods	speciesName-methods
setNames	speciesNames-methods
setNames,MapCollection-method	MapCollection-class
setNames-methods	speciesNames-methods
shift	MMSlidingWindow-class
shift,MMSlidingWindow-method	MMSlidingWindow-class
shift<-	MMSlidingWindow-class
shift<-,MMSlidingWindow-method	MMSlidingWindow-class
size	MMSlidingWindow-class
size,MMSlidingWindow-method	MMSlidingWindow-class
size<-	MMSlidingWindow-class
size<-,MMSlidingWindow-method	MMSlidingWindow-class
span	MMLoess-class
span,MMLoess-method	MMLoess-class
span<-	MMLoess-class
span<-,MMLoess-method	MMLoess-class
spar	MMSpline3-class
spar,MMSpline3-method	MMSpline3-class
spar<-	MMSpline3-class
spar<-,MMSpline3,numeric-method	MMSpline3-class
startMareyMapGUI	startMareyMapGUI-methods
startMareyMapGUI,missing-method	startMareyMapGUI-methods
startMareyMapGUI-methods	startMareyMapGUI-methods
textFile	textFile-methods
textFile,MapCollection,character-method	MapCollection-class
textFile,MapSet,character-method	SpeciesMaps-class
textFile,MareyMap,character-method	MareyMap-class
textFile-methods	textFile-methods
threshold	MMSlidingWindow-class
threshold,MMSlidingWindow-method	MMSlidingWindow-class
threshold<-	MMSlidingWindow-class
threshold<-,MMSlidingWindow-method	MMSlidingWindow-class
type	MMSpline3-class
type,MMSpline3-method	MMSpline3-class
type<-	MMSpline3-class
type<-,MMSpline3,character-method	MMSpline3-class
userParam	userParam-methods
userParam,Interpolation-method	Interpolation-class
userParam,MMLoess-method	MMLoess-class
userParam,MMSlidingWindow-method	MMSlidingWindow-class
userParam,MMSpline3-method	MMSpline3-class
userParam-methods	userParam-methods
validPositions	validPositions-methods
validPositions,MareyMap-method	MareyMap-class
validPositions-methods	validPositions-methods
visible	visible-methods
visible,Interpolation-method	Interpolation-class
visible-methods	visible-methods
visible<-	visible-methods
visible<-,Interpolation-method	Interpolation-class
visible<--methods	visible-methods
[,MapCollection-method	MapCollection-class
[,MapSet-method	SpeciesMaps-class
[,MareyMap-method	MareyMap-class
[[,MapCollection-method	MapCollection-class
[[,MapSet-method	SpeciesMaps-class
[[,MareyMap-method	MareyMap-class
[[<-,MapCollection,ANY,ANY,MapSet-method	MapCollection-class
[[<-,MapCollection,ANY,ANY,MareyMap-method	MapCollection-class
[[<-,MapSet,ANY,ANY,MareyMap-method	SpeciesMaps-class
[[<-,MareyMap,ANY,ANY,ANY-method	MareyMap-class
[[<-,MareyMap-method	MareyMap-class
