Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.

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Documentation for package ‘MAVTgsa’ version 1.3

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MAVTgsa-package OLS and Multivariate Analysis of Variance test for gene set analysis
data Example data for MAVTn
design.matrix Design matrix
GS Example data for MAVTn
GSTplot GST plot
Hott2 Hottelling's T square
ma.estimate Estimate of the coefficients
MAVTgsa OLS and Multivariate Analysis of Variance test for gene set analysis
MAVTn OLS, Hottelling's T2 and MANOVA with n contrasts
MAVTp Random Forests-based procedure
minp P-values adjustment in permutation
Tols Ordinary Least Square test
Wilksn Wilk's Lambda for n-group multiple comparisons