characterizeReactions |
Characterize stoichiometric reactions by compartments and reaction type |
checkBalance |
Evaluate the mass or charge balance for a set of stoichiometric reactions |
compartments |
Extract the compartments associated to metabolites of a set of stoichiometric reactions. |
downloadChEBI |
Download the ChEBI database |
metabolites |
Identify the list of metabolites for a set of stoichiometric reactions |
orphanMetabolites |
Identify the orphan metabolites of a set of stoichiometric reactions |
orphanProducts |
Identify the orphan metabolites of a set of stoichiometric reactions |
orphanReactants |
Identify the orphan metabolites of a set of stoichiometric reactions |
products |
Identify the products of a stoichometric reaction |
reactants |
Identify the reactants of a stoichometric reaction |
stoichiometricMatrix |
Build the stoichiometric matrix for a set of stoichiometric reactions |
validateSyntax |
Evaluate if a stoichiometric reaction has a valid syntax |
writeSBMLmod |
Write a model in SBML format |
writeTSVmod |
Write a model in TSV format for the 'sybil' R package |