# Network Enrichment Analysis

## Documentation for package ‘NEArender’ version 1.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

as_genes_fgs | Create single-gene FGS
benchmark | Benchmark networks using Network Enrichment Analysis (NEA)
can.sig.go | Example functional gene sets (FGS) from GO and KEGG
connectivity | Connectivity
fantom5.43samples | A Fantom5 transcriptomes in 43 carincinoma cell samples
gsea.render | Gene Set Enrichment Analysis (GSEA)
import.gs | Read in an AGS or FGS test file
import.net | Import a network text file
mutations2ags | Create AGS from a mutation matrix
nea.render | Network Enrichment Analysis (NEA)
net.kegg | A more compact alternative global network for the network enrichment analysis
roc | ROC for NEA benchmarks
samples2ags | Create AGS from a raw data matrix.
save_gs_list | Create a TAB-delimited text file from AGS or FGS
tcga.gbm | NEArender
topology2nd | Higher order topology and correlation between node degrees