The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.


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Documentation for package ‘PAGI’ version 1.0

Help Pages

CalGIF Calculate the global influence factor (GIF)
class.labels The variables in the environment variable ExampleData of the system
dataset The variables in the environment variable ExampleData of the system
ExampleData The variables in the environment variable ExampleData of the system
getclass.labels Get the labels of example dataset
getdataset Get the example dataset
netWorkdata The variables in the environment variable PAGIData of the system
PAGI.Main A novel pathway identification approach based on global influence from both the internal effect of pathways and crosstalk between pathways
PAGIData The variables in the environment variable PAGIData of the system
pathway.db The variables in the environment variable PAGIData of the system