paleotree-package	paleotree-package
accioBestAcquisitionModel	exhaustionFunctions
accioExhaustionCurve	exhaustionFunctions
addTermBranchLength	modifyTerminalBranches
ammoniteTraitsRaia	RaiaCopesRule
ammoniteTreeRaia	RaiaCopesRule
ancPropStateMat	minCharChange
bindPaleoTip	modifyTerminalBranches
binTimeData	binTimeData
bin_cal3TimePaleoPhy	cal3TimePaleoPhy
bin_timePaleoPhy	timePaleoPhy
branchClasses	branchClasses
cal3	cal3TimePaleoPhy
cal3TimePaleoPhy	cal3TimePaleoPhy
candleTaxa	termTaxa
ceratopsianTreeRaia	RaiaCopesRule
cervidTreeRaia	RaiaCopesRule
charExhaustPlot	exhaustionFunctions
charMatDicrano	SongZhangDicrano
cladogeneticTraitCont	cladogeneticTraitCont
cladogramDicranoX12	SongZhangDicrano
cladogramDicranoX13	SongZhangDicrano
cleanNewPhylo	testEdgeMat
cleanTree	testEdgeMat
collapseNodes	degradeTree
communityEcology	communityEcology
compareNodeAges	compareTimescaling
compareTermBranches	compareTimescaling
compareTimescaling	compareTimescaling
constrainParPaleo	constrainParPaleo
createMrBayesConstraints	createMrBayesConstraints
createMrBayesTipCalibrations	createMrBayesTipCalibrations
createMrBayesTipDatingNexus	createMrBayesTipDatingNexus
dateNodes	dateNodes
dateTaxonTreePBDB	dateTaxonTreePBDB
deadTree	termTaxa
degradeTree	degradeTree
depthRainbow	depthRainbow
divCurveFossilRecordSim	divCurveFossilRecordSim
DiversityCurves	DiversityCurves
dropExtant	modifyTerminalBranches
dropExtinct	modifyTerminalBranches
dropPaleoTip	modifyTerminalBranches
dropZLB	modifyTerminalBranches
durationFreq	durationFreq
equation2function	equation2function
exhaustionFunctions	exhaustionFunctions
expandTaxonTree	expandTaxonTree
fixRootTime	fixRootTime
footeValues	footeValues
foramAL	macroperforateForam
foramALb	macroperforateForam
foramAM	macroperforateForam
foramAMb	macroperforateForam
fossilRecord2fossilRanges	simFossilRecordMethods
fossilRecord2fossilTaxa	simFossilRecordMethods
fossilTaxa2fossilRecord	simFossilRecordMethods
fourDate2timeList	timeList2fourDate
fourDateFunctions	timeList2fourDate
freqRat	freqRat
getCladeTaxaPBDB	getDataPBDB
getDataPBDB	getDataPBDB
getPBDBocc	getDataPBDB
getSpecificTaxaPBDB	getDataPBDB
graptCharMatrix	graptDisparity
graptDisparity	graptDisparity
graptDistMat	graptDisparity
graptOccPBDB	graptPBDB
graptPBDB	graptPBDB
graptRanges	graptDisparity
graptTaxaPBDB	graptPBDB
graptTimeTree	graptPBDB
graptTree	graptPBDB
horizonSampRate	horizonSampRate
HurlbertPIE	communityEcology
inverseSurv	inverseSurv
invSurv	inverseSurv
kanto	kanto
macroperforateForam	macroperforateForam
makePBDBtaxonTree	makePBDBtaxonTree
make_durationFreqCont	durationFreq
make_durationFreqDisc	durationFreq
make_inverseSurv	inverseSurv
minBranchLen	minBranchLength
minBranchLength	minBranchLength
minCharChange	minCharChange
minimumBranchLen	minBranchLength
minimumBranchLength	minBranchLength
modelMethods	modelMethods
modifyTerminalBranches	modifyTerminalBranches
multiDiv	multiDiv
nearestNeighborDist	nearestNeighborDist
nodeDates2branchLengths	nodeDates2branchLengths
obtainDatedPosteriorTreesMrB	obtainDatedPosteriorTreesMrB
occData2timeList	occData2timeList
optimPaleo	optimPaleo
pairwiseSpearmanRho	communityEcology
paleotree	paleotree-package
parbounds	modelMethods
parbounds.constrained	modelMethods
parbounds.paleotreeFunc	modelMethods
parbounds<-	modelMethods
parbounds<-.constrained	modelMethods
parbounds<-.paleotreeFunc	modelMethods
parentChild2taxonTree	parentChild2taxonTree
parInit	modelMethods
parInit.constrained	modelMethods
parInit.paleotreeFunc	modelMethods
parLower	modelMethods
parLower.constrained	modelMethods
parLower.paleotreeFunc	modelMethods
parLower<-	modelMethods
parLower<-.constrained	modelMethods
parLower<-.paleotreeFunc	modelMethods
parnames	modelMethods
parnames.constrained	modelMethods
parnames.paleotreeFunc	modelMethods
parnames<-	modelMethods
parnames<-.constrained	modelMethods
parnames<-.paleotreeFunc	modelMethods
parUpper	modelMethods
parUpper.constrained	modelMethods
parUpper.paleotreeFunc	modelMethods
parUpper<-	modelMethods
parUpper<-.constrained	modelMethods
parUpper<-.paleotreeFunc	modelMethods
perCapitaRates	perCapitaRates
perfectParsCharTree	perfectParsCharTree
phyloDiv	DiversityCurves
PIE	communityEcology
plotMultiDiv	multiDiv
plotOccData	plotOccData
plotPhyloPicTree	plotPhyloPicTree
plotTaxaTreePBDB	makePBDBtaxonTree
plotTraitgram	plotTraitgram
pqr2Ps	pqr2Ps
pqsRate2sProb	SamplingConv
ProbabilityInterspecificEncounter	communityEcology
probAnc	probAnc
qsProb2Comp	SamplingConv
qsRate2Comp	SamplingConv
RaiaCopesRule	RaiaCopesRule
resolveTreeChar	resolveTreeChar
retioChar	retiolitinae
retiolitinae	retiolitinae
retioRanges	retiolitinae
retioTree	retiolitinae
reverseList	reverseList
rootSplit	rootSplit
sampleRanges	sampleRanges
SamplingConv	SamplingConv
seqTimeList	seqTimeList
setRootAge	setRootAge
setRootAges	setRootAge
shellSize	RaiaCopesRule
simCandleTaxa	termTaxa
simFossilRecord	simFossilRecord
simFossilRecordMethods	simFossilRecordMethods
simTermTaxa	termTaxa
simTermTaxaAdvanced	termTaxa
SongZhangDicrano	SongZhangDicrano
sProb2sRate	SamplingConv
sRate2sProb	SamplingConv
sutureComplexity	RaiaCopesRule
taxa2cladogram	taxa2cladogram
taxa2phylo	taxa2phylo
taxicDivCont	DiversityCurves
taxicDivDisc	DiversityCurves
taxonSortPBDBocc	taxonSortPBDBocc
taxonTable2taxonTree	taxonTable2taxonTree
termTaxa	termTaxa
testEdgeMat	testEdgeMat
timeLadderTree	timeLadderTree
timeList2fourDate	timeList2fourDate
timePaleoPhy	timePaleoPhy
timeSliceFossilRecord	simFossilRecordMethods
timeSliceTree	timeSliceTree
tipdating	createMrBayesTipDatingNexus
tipDatingCompatabilitySummaryMrB	tipDatingCompatabilitySummaryMrB
treeContradiction	treeContradiction
trueCandle	termTaxa
trueTermTaxaTree	termTaxa
twoWayEcologyCluster	twoWayEcologyCluster
unitLengthTree	unitLengthTree
