# PepSAVI-MS Data Analysis

## Documentation for package ‘PepSAVIms’ version 0.9.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

binMS | Consolidate mass spectrometry observations
bioact | Bioactivity data
extractMS | Extract embedded mass spectrometry data
extract_ranked | Extract candidate compounds
filterMS | Filter compounds from mass spectrometry data
mass_spec | Mass spectrometry data
msDat | Constructor for class 'msDat'
print.filterMS | Basic information for class 'filterMS'
print.msDat | Print method for class 'msDat'
print.rankEN | Basic information for class 'rankEN'
rankEN | Rank compounds via the Elastic Net path
summary.binMS | Overview of the binning process
summary.filterMS | Overview of the filtering process
summary.rankEN | Overview of the elastic net selection process