# Prioritize Diseases Candidate Genes with the Network and on Functional Information

## Documentation for package ‘prioGene’ version 0.99.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

deal_net | Title deal with network
dise_gene | a vector of disease related genes
edge_weight | weights of edges of a net
genes_mat | a one-to-many matrix of GO term and gene
get_edge_weight | Title weight edge
get_gene_mat | Title Get a one-to-many matrix of gene and GO term
get_neighbor | Title get neighbor of a node
get_net_disease_term | Title Get the GO terms for each pair of nodes in the network
get_node_weight | Title weight node
get_Q | Title get the disease risk transition probability matrix
get_R | Title get the final genetic disease risk scores
get_R_0 | Title get the vector of initial disease risk scores for all genes
get_term_mat | Title Get a one-to-many matrix of GO term and gene
get_W | Title
GO_human | a matrix, gene and GO terms
net | a network of genes
net_disease | a network of disease related genes
net_disease_term | GO terms for each pair of nodes in the network
node_weight | a matrix, genes and their weights
Q | the disease risk transition probability matrix
R_0 | the vector of initial disease risk scores for all genes
terms_mat | a matrix, GO terms and GO genes