# Species Distribution Modelling

## Documentation for package ‘sdm’ version 1.1-8

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

+-method | Combine (merge) two sdmModels into a single object
add | add a new method to the package
add-method | add a new method to the package
Arith-methods | Combine (merge) two sdmModels into a single object
as.data.frame | Get a data.frame with record id values (rID)
as.data.frame-method | Get a data.frame with record id values (rID)
boxplot | boxplot
boxplot-method | boxplot
calibration | Calibration
calibration-method | Calibration
characterORmissing-class | sdmModels classes
characterORnull-class | sdmModels classes
coordinates | get or set spatial coordinates of species data
coordinates-method | get or set spatial coordinates of species data
coordinates<- | get or set spatial coordinates of species data
coordinates<--method | get or set spatial coordinates of species data
CRSorNULL-class | sdmModels classes
data.frameORnull-class | sdmModels classes
density | density
density-method | density
ensemble | Ensemble Forecasting of SDMs
ensemble-method | Ensemble Forecasting of SDMs
environmentORnull-class | sdmModels classes
evaluates | evaluate for accuracy
evaluates-method | evaluate for accuracy
expressionORnull-class | sdmModels classes
featuresFrame-class | featureFrame class
formulaORnull-class | sdmModels classes
functionORcharacter-class | sdmModels classes
functionORnull-class | sdmModels classes
getEvaluation | evaluate for accuracy
getEvaluation-method | evaluate for accuracy
getmethod | add a new method to the package
getmethod-method | add a new method to the package
getmethodNames | add a new method to the package
getmethodNames-method | add a new method to the package
getModelId | Get information/modelIDs relevant to fitted models in a sdmModels object
getModelId-method | Get information/modelIDs relevant to fitted models in a sdmModels object
getModelInfo | Get information/modelIDs relevant to fitted models in a sdmModels object
getModelInfo-method | Get information/modelIDs relevant to fitted models in a sdmModels object
getModelObject | Get information/modelIDs relevant to fitted models in a sdmModels object
getModelObject-method | Get information/modelIDs relevant to fitted models in a sdmModels object
getReplication | evaluate for accuracy
getReplication-method | evaluate for accuracy
getResponseCurve | Generate and plot response curves
getResponseCurve-method | Generate and plot response curves
getRoc | plot ROC curves
getRoc-method | plot ROC curves
getVarImp | variable importance
getVarImp-method | variable importance
gui | Graphical User Interface
gui-method | Graphical User Interface
installAll | install all packages that may be required by the package
installAll-method | install all packages that may be required by the package
listORcharacter-class | sdmModels classes
listORnull-class | sdmModels classes
matrixORnull-class | sdmModels classes
names | Names of species
names-method | Names of species
names<- | Names of species
names<--method | Names of species
niche | Generate and plot Ecological Niche
niche-method | Generate and plot Ecological Niche
numericORnull-class | sdmModels classes
plot-method | Generate and plot Ecological Niche
plot-method | Generate and plot response curves
predict | sdm model prediction
predict-method | sdm model prediction
rcurve | Generate and plot response curves
rcurve-method | Generate and plot response curves
read.sdm | read/write sdm* object from/to a file
read.sdm-method | read/write sdm* object from/to a file
roc | plot ROC curves
roc-method | plot ROC curves
sdm | Fit and evaluate species distribution models
sdm-method | Fit and evaluate species distribution models
sdmCorrelativeMethod-class | sdmCorrelativeMethod class
sdmData | creating sdm Data object
sdmdata-class | An S4 class representing sdm dataset
sdmData-method | creating sdm Data object
sdmEvaluate-class | sdmModels classes
sdmFormula-class | sdmModels classes
sdmModels-class | sdmModels classes
sdmSetting | creating sdmSetting object
sdmSetting-method | creating sdmSetting object
show-method | sdmModels classes
show-method | creating sdmSetting object
show-method | An S4 class representing sdm dataset
subset | Subset models in a sdmModels object
subset-method | Subset models in a sdmModels object
write.sdm | read/write sdm* object from/to a file
write.sdm-method | read/write sdm* object from/to a file
[-method | Indexing to extract records of a sdmdata object
[[-method | Subset models in a sdmModels object