# Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing

## Documentation for package ‘selfingTree’ version 0.2

- DESCRIPTION file.

## Help Pages

selfingTree-package | Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing
buildSelfingTree | Builds the probability tree
evalProb | Evaluates the genotype probability
extractProbs | Extracts conditional genotype probabilities
F4 | Genotypes of one million simulated F4 lines.
genSubtree.2M | Generates a sub-tree
genSubtree.3M | Generates a sub-tree
getTargets | Obtain all possible genotypes that match a certain target configuration
haploProb.2M | Probability of observing the target haplotype given the parental genotype.
haploProb.3M | Probability of observing the target haplotype given the parental genotype.
map | Genetic map of the three markers in the F4 data set.
nodeProbabilities | Multiplies conditional probabilities along all branches of the tree
selfingTree | Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing