Retrieve Genomic and Clinical Data from TCGA

Documentation for package ‘TCGAretriever’ version 1.3

TCGAretriever-package	Retrieve Genomic and Clinical Data from TCGA
basic_tcga_query	TCGA Core Query Engine
expand_cases	Explode TCGA Case Identifiers from a TCGA Study
fetch_all_tcgadata	Recursively Fetch All Data Included in a TCGA Study Subset
get_cancer_studies	Retrieve a List of Cancer Studies Available at TCGA
get_cancer_types	Retrieve a List of Cancer Types as Defined by the TCGA Guidelines
get_case_lists	Retrieve All Case List Available for a Specific TCGA Study
get_clinical_data	Retrieve Clinical Information from a TCGA Study
get_ext_mutation	Retrieve Extended Information About DNA Mutations from TCGA
get_genetic_profiles	Retrieve Genetic Profiles for a TCGA Study of Interest
get_profile_data	Retrieve TCGA Data corresponding to a Specific Genetic Profile of Interest
get_protein_data	Retrieve Protein Expression Data from a TCGA Study
get_protein_info	Retrieve Information on Antibodies Used for Protein Levels Determination
make_groups	Split Numeric Vectors in Groups
TCGAretriever	Retrieve Genomic and Clinical Data from TCGA
trim_rnaseq_tcgadata	RNAseq Expression Data Trimmer