Simulating Realistic Gene Expression Data


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Documentation for package ‘Umpire’ version 1.3.7

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alterMean Methods "alterMean" and "alterSD"
alterMean-method The "Engine" Class
alterMean-method The "IndependentNormal" Class
alterMean-method The "MVN" Class
alterMean-method Methods "alterMean" and "alterSD"
alterSD Methods "alterMean" and "alterSD"
alterSD-method The "Engine" Class
alterSD-method The "IndependentNormal" Class
alterSD-method The "MVN" Class
alterSD-method Methods "alterMean" and "alterSD"
BlockHyperParameters The "BlockHyperParameters" Class
BlockHyperParameters-class The "BlockHyperParameters" Class
blur Method "blur"
blur-method The "NoiseModel" Class
blur-method Method "blur"
CancerEngine The "CancerEngine" Class
CancerEngine-class The "CancerEngine" Class
CancerModel The "CancerModel" Class
CancerModel-class The "CancerModel" Class
correl The "MVN" Class
covar The "MVN" Class
Engine The "Engine" Class
Engine-class The "Engine" Class
EngineWithActivity The "EngineWithActivity" Class
EngineWithActivity-class The "EngineWithActivity" Class
IndependentLogNormal The "IndependentLogNormal" Class
IndependentLogNormal-class The "IndependentLogNormal" Class
IndependentNormal The "IndependentNormal" Class
IndependentNormal-class The "IndependentNormal" Class
invGammaMultiple Transform functions
makeBlockStructure The "BlockHyperParameters" Class
MVN The "MVN" Class
MVN-class The "MVN" Class
ncol-method The "CancerModel" Class
nComponents The "Engine" Class
nHitsPerPattern The "CancerModel" Class
NoiseModel The "NoiseModel" Class
NoiseModel-class The "NoiseModel" Class
normalOffset Transform functions
NormalVsCancerEngine Simulating Cancer Versus Normal Datasets
NormalVsCancerModel Simulating Cancer Versus Normal Datasets
nPatterns The "CancerModel" Class
nPossibleHits The "CancerModel" Class
nrow-method The "Engine" Class
nrow-method The "IndependentNormal" Class
nrow-method The "IndependentLogNormal" Class
nrow-method The "MVN" Class
nrow-method The "CancerModel" Class
outcomeCoefficients The "CancerModel" Class
rand Method "rand"
rand-method The "Engine" Class
rand-method The "EngineWithActivity" Class
rand-method The "IndependentNormal" Class
rand-method The "IndependentLogNormal" Class
rand-method The "MVN" Class
rand-method The "SurvivalModel" Class
rand-method The "CancerModel" Class
rand-method The "CancerEngine" Class
rand-method Method "rand"
summary-method The "Engine" Class
summary-method The "EngineWithActivity" Class
summary-method The "IndependentNormal" Class
summary-method The "IndependentLogNormal" Class
summary-method The "MVN" Class
summary-method The "CancerModel" Class
summary-method The "CancerEngine" Class
survivalCoefficients The "CancerModel" Class
SurvivalModel The "SurvivalModel" Class
SurvivalModel-class The "SurvivalModel" Class