Access Vegetation Databases and Treat Taxonomy


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Documentation for package ‘vegdata’ version 0.9.5

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vegdata-package Functions to access data from vegetation databases and evaluate taxon names (with GermanSL).
child Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
childs Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
comb.species Handling of taxonomy in vegetation data.
elbaue Species Data and Altitude from floodplains of the river Elbe, Germany.
elbaue.env Species Data and Altitude from floodplains of the river Elbe, Germany.
freqtab Syntaxonomic frequency tables
isc Indicate site conditions with community weighted mean values of traits or with mode of gradient classes (sum of species amplitudes).
lc Templates for pseudo-species according to Turboveg layer informations.
lc.0 Templates for pseudo-species according to Turboveg layer informations.
lc.1 Templates for pseudo-species according to Turboveg layer informations.
lc.all Templates for pseudo-species according to Turboveg layer informations.
meanTraits Load species traits from Turboveg reference list
monotypic Creates a list of (regional) monotypic taxa from the given taxonomic checklist
parent Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
parents Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
print.syntab Syntaxonomic frequency tables
showindiplot Indicate site conditions with community weighted mean values of traits or with mode of gradient classes (sum of species amplitudes).
syn Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
syntab Syntaxonomic frequency tables
tax Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
tax.default Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
tax.veg Query of Turboveg 2 taxonomic reference lists including (if available) concept synonomy and taxonomic hierarchy.
taxval Handling of taxonomy in vegetation data.
tv.biblio Check bibliographic references from Turboveg codes
tv.compRefl Compare different taxonomical reference lists.
tv.coverperc Cover code translation
tv.db Tabulates vegetation tables from Turboveg database
tv.eco Load species traits from Turboveg reference list
tv.metadata Show metainfo of vegetation database or ecodbase
tv.mono Creates a list of (regional) monotypic taxa from the given taxonomic checklist
tv.obs Dataframe of plot-species observations directly from Turboveg
tv.readXML Read Turboveg XML
tv.site Load site data from Turboveg Database
tv.taxval Handling of taxonomy in vegetation data.
tv.traits Load species traits from Turboveg reference list
tv.veg Tabulates vegetation tables from Turboveg database
tv.write Write species-plot observations and site information to Turboveg database.
vegdata Functions to access data from vegetation databases and evaluate taxon names (with GermanSL).