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| vhica-package | Vertical and Horizontal Inheritance Consistence Analysis |
| CUB | Computes the Codon Usage Bias of DNA sequences |
| div | Computation of the synonymous divergence between sequences |
| image.vhica | Consistency matrix for a transposable element in the VHICA analysis. |
| plot.vhica | Plots a VHICA regression between two species. |
| read.vhica | Reads divergence and codon usage data files for the VHICA method. |
| vhica | Vertical and Horizontal Inheritance Consistence Analysis |