# This file created by conda-build 2.1.17
# meta.yaml template originally from:
# /Users/rdonnelly/conda/conda-recipes/r-packages/r-ape, last modified Fri Jun 30 13:11:42 2017
# ------------------------------------------------

package:
    name: r-ape
    version: '4.1'
source:
    fn: ape_4.1.tar.gz
    sha256: 935af5ddadcba832d3f9cc032a80fc1a2e627a7ed54ef5f3773f87e06374a924
    url:
        - https://cran.r-project.org/src/contrib/ape_4.1.tar.gz
        - https://cran.r-project.org/src/contrib/Archive/ape/ape_4.1.tar.gz
build:
    noarch: ''
    noarch_python: false
    number: '0'
    rpaths:
        - lib/R/lib/
        - lib/
    string: r3.4.1_0
requirements:
    build:
        - cairo 1.14.8 0
        - cloog 0.18.0 0
        - curl 7.54.1 0
        - fontconfig 2.12.1 3
        - freetype 2.5.5 2
        - gcc 4.8.5 8
        - gettext 0.19.8 1
        - glib 2.50.2 1
        - gmp 6.1.0 0
        - gsl 2.2.1 0
        - harfbuzz 0.9.39 2
        - icu 54.1 0
        - isl 0.12.2 1
        - jbig 2.1 0
        - jpeg 9b 0
        - krb5 1.13.2 0
        - libffi 3.2.1 1
        - libgcc 4.8.5 1
        - libiconv 1.14 0
        - libpng 1.6.27 0
        - libssh2 1.8.0 0
        - libtiff 4.0.6 3
        - libxml2 2.9.4 0
        - mpc 1.0.3 0
        - mpfr 3.1.5 0
        - ncurses 5.9 10
        - openssl 1.0.2l 0
        - pango 1.40.3 1
        - pcre 8.39 1
        - pixman 0.34.0 0
        - r-base 3.4.1 0
        - r-lattice 0.20_35 r3.4.1_0
        - r-nlme 3.1_131 r3.4.1_0
        - readline 6.2 2
        - tk 8.5.18 0
        - xz 5.2.2 1
        - zlib 1.2.8 3
    run:
        - r-base
        - r-lattice
        - r-nlme
        - libgcc
test:
    commands:
        - $R -e "library('ape')"
about:
    home: http://ape-package.ird.fr/
    license: GPL (>= 2)
    license_family: GPL3
    summary: Functions for reading, writing, plotting, and manipulating phylogenetic
        trees, analyses of comparative data in a phylogenetic framework, ancestral
        character analyses, analyses of diversification and macroevolution, computing
        distances from DNA sequences, reading and writing nucleotide sequences as
        well as importing from BioConductor, and several tools such as Mantel's test,
        generalized skyline plots, graphical exploration of phylogenetic data (alex,
        trex, kronoviz), estimation of absolute evolutionary rates and clock-like
        trees using mean path lengths and penalized likelihood, dating trees with
        non-contemporaneous sequences, translating DNA into AA sequences, and assessing
        sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ,
        ME, MVR, SDM, and triangle methods, and several methods handling incomplete
        distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method).
        Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle)
        whose results are returned into R.
extra:
    final: true
