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| junctions-package | Extending The Theory of Junctions |
| calculate_mat | Function to calculate the maximum accurate time |
| calc_k | Calculate the limit of the number of junctions |
| estimate_time | Estimate the time since the onset of hybridization, using the number of junctions |
| junctions | Extending The Theory of Junctions |
| number_of_junctions | Calculate the average number of junctions |
| sim_fin_chrom | Individual Based Simulation of the accumulation of junctions |
| sim_inf_chrom | Individual Based Simulation of the accumulation of junctions |
| time_error | Estimate the error in the time estimate |