Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies


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Documentation for package ‘kyotil’ version 2018.10-17

Help Pages

A B C D E F G H I K L M P Q R S T U V W Y misc

-- A --

abline.pt.slope Plotting Functions
abline.pts Plotting Functions
abline.shade Plotting Functions
abline.shade.2 Plotting Functions
add.mtext.label Plotting Functions
age_calc Age Calculation
AR1 Matrix and Array Functions
array.functions Matrix and Array Functions
as.binary Math Functions

-- B --

binary Some Base Functions
binary2 Some Base Functions
binom.coef Math Functions
butterfly.plot Plotting Functions

-- C --

cbinduneven Some Base Functions
coef.Deming Fit Deming regression.
coef.geese Regression Model Functions
coef.tps Regression Model Functions
concatList Matrix and Array Functions
contain String Functions
cor.mixed Stat Functions
cor.mixed.default Stat Functions
cor.mixed.formula Stat Functions
cor.mixed.vector Stat Functions
corplot Plotting Functions
corplot.default Plotting Functions
corplot.formula Plotting Functions
cox.zph.2 Test the Proportional Hazards Assumption of a Cox Regression (a slightly modified version)

-- D --

dbern Random Functions
dcorbern Random Functions
ddoublexp Random Functions
Deming Fit Deming regression.
DMHeatMap Better Heatmap Function
dmixnorm Random Functions
dnorm.norm.gamma Random Functions
DXD Matrix Functions that May Be Faster than

-- E --

empty.plot Plotting Functions
empty2na Misc Functions
escapeUnderline String Functions
EXCH Matrix and Array Functions
expit Math Functions

-- F --

f2c Some Base Functions
fileStem String Functions
fill.jagged.array Matrix and Array Functions
firstIndex String Functions
formatDouble Print Functions
formatInt Print Functions
ftoi Some Base Functions

-- G --

get.sim.res Read simulation results
getExt String Functions
getFileStem String Functions
getFixedEf Regression Model Functions
getFixedEf.coxph Regression Model Functions
getFixedEf.Deming Fit Deming regression.
getFixedEf.gam Regression Model Functions
getFixedEf.gee Regression Model Functions
getFixedEf.geese Regression Model Functions
getFixedEf.glm Regression Model Functions
getFixedEf.inla Regression Model Functions
getFixedEf.lm Regression Model Functions
getFixedEf.lme Regression Model Functions
getFixedEf.lmerMod Regression Model Functions
getFixedEf.logistf Regression Model Functions
getFixedEf.matrix Regression Model Functions
getFixedEf.mer Regression Model Functions
getFixedEf.MIresult Regression Model Functions
getFixedEf.tps Regression Model Functions
getFixedEf2 Regression Model Functions
getFormattedMCSummary Read simulation results
getFormattedSummary Regression Model Functions
getK getK
getMfrow Plotting Functions
getMidPoints Matrix and Array Functions
getStem String Functions
getUpperRight Matrix and Array Functions
getVarComponent Regression Model Functions
getVarComponent.hyperpar.inla Regression Model Functions
getVarComponent.lmerMod Regression Model Functions
getVarComponent.matrix Regression Model Functions

-- H --

H Stat Functions
hosmerlem Testing Functions

-- I --

info.cor Stat Functions
interaction.table Regression Model Functions
interpolate Math Functions

-- K --

kappa.cor Stat Functions
keepWarnings Some Base Functions
kyotil kyotil

-- L --

l.measure Stat Functions
last Matrix and Array Functions
lastIndex String Functions
logDiffExp Math Functions
logit Math Functions
logMeanExp Math Functions
logSumExp Math Functions
logSumExpFor2 Math Functions

-- M --

make.latex.coef.table Print Functions
make.timedep.dataset Create Dataset for Time-dependent Covariate Proportional Hazard Model Analaysi
math.functions Math Functions
matrix.array.functions Matrix and Array Functions
matrix.functions Matrix and Array Functions
MCsummary Read simulation results
meanmed Some Base Functions
methods4 Some Base Functions
mix Matrix and Array Functions
multi.outer Some Base Functions
mutual.info Stat Functions
my.interaction.plot Plotting Functions
myaggregate Some Base Functions
myboxplot Plotting Functions
myboxplot.data.frame Plotting Functions
myboxplot.formula Plotting Functions
myboxplot.list Plotting Functions
mycor Some Base Functions
mydev.off Plotting Functions
myfigure Plotting Functions
myfisher.test Testing Functions
myforestplot Plotting Functions
myhist Plotting Functions
mylegend Plotting Functions
mymatplot Plotting Functions
mypairs Plotting Functions
mypdf Plotting Functions
myplot.cox.zph Vaccine Efficacy Plots
mypng Plotting Functions
mypostscript Plotting Functions
myprint String Functions
myprint.default String Functions
myreshapelong Some Base Functions
myreshapewide Some Base Functions
mysapply Some Base Functions
myscale Some Base Functions
mysystem Some Base Functions
mytapply Some Base Functions
mytex Print Functions
mytex.begin Print Functions
mytex.end Print Functions
mytiff Plotting Functions
mywrite Print Functions
mywrite.csv Print Functions

-- P --

panel.cor Plotting Functions
panel.hist Plotting Functions
panel.nothing Plotting Functions
pava Misc Functions
pdoublexp Random Functions
permn Math Functions
predict.Deming Fit Deming regression.
predict.geese Regression Model Functions
predict.tps Regression Model Functions

-- Q --

qdoublexp Random Functions
quick.t.test Testing Functions

-- R --

rbern Random Functions
rbidoublexp Random Functions
rbigamma Random Functions
rbilogistic Random Functions
rdoublexp Random Functions
read.sv Some Base Functions
read.tsv Some Base Functions
rejective.sampling Random Functions
remove.prefix String Functions
rep.data.frame Matrix and Array Functions
rep.matrix Matrix and Array Functions
rep.matrix.block Matrix and Array Functions
residuals.geese Regression Model Functions
risk.cal Regression Model Functions
rmixnorm Random Functions
rnorm.cor Random Functions
rnorm.norm.gamma Random Functions
roundup Print Functions

-- S --

sample.for.cv Misc Functions
shift.left Matrix and Array Functions
shift.right Matrix and Array Functions
signtest Testing Functions
sim.dat.tvarying.three Simulation Functions for Time-dependent Proportional Hazard Model
sim.dat.tvarying.two Simulation Functions for Time-dependent Proportional Hazard Model
skew Stat Functions
stat.functions Stat Functions
Stirling2 Math Functions
string.functions String Functions
summ Misc Functions
summary.Deming Fit Deming regression.
symprod Matrix Functions that May Be Faster than

-- T --

table.cases Some Base Functions
table.cases.3 Some Base Functions
table.prop Some Base Functions
thin.rows Matrix and Array Functions
ThinRows Matrix and Array Functions
tr Matrix and Array Functions
trim String Functions
tukey.mtest Testing Functions
tXDX Matrix Functions that May Be Faster than
txSy Matrix Functions that May Be Faster than

-- U --

unix Some Base Functions

-- V --

vcov.Deming Fit Deming regression.
vcov.geese Regression Model Functions
vcov.logistf Regression Model Functions
vcov.tps Regression Model Functions
vector.t.test Testing Functions
VEplot Vaccine Efficacy Plots
VEplot.cox.zph Vaccine Efficacy Plots
VEplot.glm Plotting Functions

-- W --

wtd.hist Plotting Functions

-- Y --

yule.y Stat Functions

-- misc --

%+% String Functions
%.% String Functions
.as.double Matrix Functions that May Be Faster than