.unal1loc	polysat-internal
Absent	Samples
Absent,genbinary-method	genbinary-class
Absent<-	Samples
Absent<-,genbinary-method	genbinary-class
alleleCorrelations	alleleCorrelations
alleleDiversity	alleleDiversity
AllopolyTutorialData	AllopolyTutorialData
assignClones	assignClones
Bruvo.distance	Bruvo.distance
Bruvo2.distance	Bruvo2.distance
calcFst	calcFst
calcPopDiff	calcFst
catalanAlleles	catalanAlleles
deleteLoci	deleteSamples
deleteLoci,genambig-method	genambig-class
deleteLoci,genbinary-method	genbinary-class
deleteLoci,gendata-method	gendata-class
deleteSamples	deleteSamples
deleteSamples,genambig-method	genambig-class
deleteSamples,genbinary-method	genbinary-class
deleteSamples,gendata-method	gendata-class
Description	Samples
Description,gendata-method	gendata-class
Description<-	Samples
Description<-,gendata-method	gendata-class
deSilvaFreq	deSilvaFreq
editGenotypes	editGenotypes
editGenotypes,genambig-method	genambig-class
editGenotypes,genbinary-method	genbinary-class
estimatePloidy	estimatePloidy
estimatePloidy,genambig-method	genambig-class
estimatePloidy,genbinary-method	genbinary-class
FCRinfo	FCRinfo
find.missing.gen	find.missing.gen
find.na.dist	meandist.from.array
find.na.dist.not.missing	meandist.from.array
fixloci	polysat-internal
freq.to.genpop	freq.to.genpop
G	polysat-internal
genambig-class	genambig-class
genambig.to.genbinary	genambig.to.genbinary
genbinary-class	genbinary-class
genbinary.to.genambig	genambig.to.genbinary
gendata-class	gendata-class
gendata.to.genind	gendata.to.genind
genIndex	genIndex
genIndex,array-method	genIndex
genIndex,genambig-method	genIndex
GENLIST	polysat-internal
Genotype	Samples
Genotype,genambig-method	genambig-class
Genotype,genbinary-method	genbinary-class
Genotype<-	Samples
Genotype<-,genambig-method	genambig-class
genotypeDiversity	genotypeDiversity
genotypeProbs	genotypeProbs
Genotypes	Samples
Genotypes,genambig-method	genambig-class
Genotypes,genbinary-method	genbinary-class
Genotypes<-	Samples
Genotypes<-,genambig-method	genambig-class
Genotypes<-,genbinary-method	genbinary-class
INDEXG	polysat-internal
initialize,genambig-method	genambig-class
initialize,genbinary-method	genbinary-class
initialize,gendata-method	gendata-class
isMissing	isMissing
isMissing,genambig-method	genambig-class
isMissing,genbinary-method	genbinary-class
Loci	Samples
Loci,gendata,missing,missing-method	gendata-class
Loci,gendata,missing,numeric-method	gendata-class
Loci,gendata,numeric,missing-method	gendata-class
Loci,gendata,numeric,numeric-method	gendata-class
Loci<-	Samples
Loci<-,genambig-method	genambig-class
Loci<-,genbinary-method	genbinary-class
Loci<-,gendata-method	gendata-class
Lynch.distance	Lynch.distance
meandist.from.array	meandist.from.array
meandistance.matrix	meandistance.matrix
meandistance.matrix2	meandistance.matrix
merge	merge-methods
merge,genambig,genambig-method	merge-methods
merge,genbinary,genbinary-method	merge-methods
merge,gendata,gendata-method	merge-methods
merge-methods	merge-methods
mergeAlleleAssignments	mergeAlleleAssignments
Missing	Samples
Missing,gendata-method	gendata-class
Missing<-	Samples
Missing<-,genambig-method	genambig-class
Missing<-,genbinary-method	genbinary-class
Missing<-,gendata-method	gendata-class
PIC	PIC
plCollapse	pld
plCollapse,ploidylocus,logical,logical-method	ploidysuper-class
plCollapse,ploidymatrix,logical,logical-method	ploidysuper-class
plCollapse,ploidyone,logical,logical-method	ploidysuper-class
plCollapse,ploidysample,logical,logical-method	ploidysuper-class
pld	pld
pld,ploidylocus-method	ploidysuper-class
pld,ploidymatrix-method	ploidysuper-class
pld,ploidyone-method	ploidysuper-class
pld,ploidysample-method	ploidysuper-class
pld<-	pld
pld<-,ploidylocus-method	ploidysuper-class
pld<-,ploidymatrix-method	ploidysuper-class
pld<-,ploidyone-method	ploidysuper-class
pld<-,ploidysample-method	ploidysuper-class
Ploidies	Samples
Ploidies,gendata-method	gendata-class
Ploidies<-	Samples
Ploidies<-,gendata-method	gendata-class
ploidylocus-class	ploidysuper-class
ploidymatrix-class	ploidysuper-class
ploidyone-class	ploidysuper-class
ploidysample-class	ploidysuper-class
ploidysuper-class	ploidysuper-class
plotParamHeatmap	plotSSAllo
plotSSAllo	plotSSAllo
PopInfo	Samples
PopInfo,gendata-method	gendata-class
PopInfo<-	Samples
PopInfo<-,gendata-method	gendata-class
PopNames	Samples
PopNames,gendata-method	gendata-class
PopNames<-	Samples
PopNames<-,gendata-method	gendata-class
PopNum	Samples
PopNum,gendata,character-method	gendata-class
PopNum<-	Samples
PopNum<-,gendata,character-method	gendata-class
Present	Samples
Present,genbinary-method	genbinary-class
Present<-	Samples
Present<-,genbinary-method	genbinary-class
processDatasetAllo	plotSSAllo
RANMUL	polysat-internal
read.ATetra	read.ATetra
read.GeneMapper	read.GeneMapper
read.GenoDive	read.GenoDive
read.POPDIST	read.POPDIST
read.SPAGeDi	read.SPAGeDi
read.STRand	read.STRand
read.Structure	read.Structure
read.Tetrasat	read.Tetrasat
recodeAllopoly	recodeAllopoly
reformatPloidies	reformatPloidies
Samples	Samples
Samples,gendata,character,missing-method	gendata-class
Samples,gendata,character,numeric-method	gendata-class
Samples,gendata,missing,missing-method	gendata-class
Samples,gendata,missing,numeric-method	gendata-class
Samples,gendata,numeric,missing-method	gendata-class
Samples,gendata,numeric,numeric-method	gendata-class
Samples<-	Samples
Samples<-,genambig-method	genambig-class
Samples<-,genbinary-method	genbinary-class
Samples<-,gendata-method	gendata-class
SELFMAT	polysat-internal
Shannon	genotypeDiversity
show,genambig-method	genambig-class
simAllopoly	simAllopoly
simgen	simgen
simpleFreq	simpleFreq
Simpson	genotypeDiversity
Simpson.var	genotypeDiversity
summary,genambig-method	genambig-class
summary,genbinary-method	genbinary-class
summary,gendata-method	gendata-class
testAlGroups	alleleCorrelations
testgenotypes	testgenotypes
Usatnts	Samples
Usatnts,gendata-method	gendata-class
Usatnts<-	Samples
Usatnts<-,gendata-method	gendata-class
viewGenotypes	viewGenotypes
viewGenotypes,genambig-method	genambig-class
viewGenotypes,genbinary-method	genbinary-class
write.ATetra	write.ATetra
write.freq.SPAGeDi	write.freq.SPAGeDi
write.GeneMapper	write.GeneMapper
write.GenoDive	write.GenoDive
write.POPDIST	write.POPDIST
write.SPAGeDi	write.SPAGeDi
write.Structure	write.Structure
write.Tetrasat	write.Tetrasat
[,genambig-method	genambig-class
[,genbinary-method	genbinary-class
[,gendata-method	gendata-class
