rstan-package |
RStan - R interface to Stan |
as.array.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
as.data.frame.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
as.matrix.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
As.mcmc.list |
Create an mcmc.list from a stanfit object |
constrain_pars |
Model's 'log_prob' and 'grad_log_prob' functions |
constrain_pars-method |
Model's 'log_prob' and 'grad_log_prob' functions |
dim.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
dimnames.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
expose_stan_functions |
Expose user-defined Stan functions to R for testing and simulation |
extract |
Extract samples from a fitted Stan model |
extract-method |
Extract samples from a fitted Stan model |
extract_sparse_parts |
Extract the compressed representation of a sparse matrix |
get_adaptation_info |
Class 'stanfit': fitted Stan model |
get_adaptation_info-method |
Class 'stanfit': fitted Stan model |
get_cppcode |
Class representing model compiled from C++ |
get_cppcode-method |
Class representing model compiled from C++ |
get_cppo_mode |
Class 'stanfit': fitted Stan model |
get_cppo_mode-method |
Class 'stanfit': fitted Stan model |
get_cxxflags |
Class representing model compiled from C++ |
get_cxxflags-method |
Class representing model compiled from C++ |
get_elapsed_time |
Class 'stanfit': fitted Stan model |
get_elapsed_time-method |
Class 'stanfit': fitted Stan model |
get_inits |
Class 'stanfit': fitted Stan model |
get_inits-method |
Class 'stanfit': fitted Stan model |
get_logposterior |
Class 'stanfit': fitted Stan model |
get_logposterior-method |
Class 'stanfit': fitted Stan model |
get_num_upars |
Model's 'log_prob' and 'grad_log_prob' functions |
get_num_upars-method |
Model's 'log_prob' and 'grad_log_prob' functions |
get_posterior_mean |
Class 'stanfit': fitted Stan model |
get_posterior_mean-method |
Class 'stanfit': fitted Stan model |
get_sampler_params |
Class 'stanfit': fitted Stan model |
get_sampler_params-method |
Class 'stanfit': fitted Stan model |
get_seed |
Class 'stanfit': fitted Stan model |
get_seed-method |
Class 'stanfit': fitted Stan model |
get_seeds |
Class 'stanfit': fitted Stan model |
get_seeds-method |
Class 'stanfit': fitted Stan model |
get_stancode |
Class 'stanfit': fitted Stan model |
get_stancode-method |
Class 'stanfit': fitted Stan model |
get_stanmodel |
Class 'stanfit': fitted Stan model |
get_stanmodel-method |
Class 'stanfit': fitted Stan model |
grad_log_prob |
Model's 'log_prob' and 'grad_log_prob' functions |
grad_log_prob-method |
Model's 'log_prob' and 'grad_log_prob' functions |
is.array.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
log_prob |
Model's 'log_prob' and 'grad_log_prob' functions |
log_prob-method |
Model's 'log_prob' and 'grad_log_prob' functions |
lookup |
Look up the Stan function that corresponds to a R function or name. |
makeconf_path |
Obtain the full path of file 'Makeconf' |
monitor |
Compute summaries of MCMC draws and monitor convergence |
names.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
names<-.stanfit |
Create array, matrix, or data.frame objects from samples in a 'stanfit' object |
optimizing |
Obtain a point estimate by maximizing the joint posterior |
optimizing-method |
Obtain a point estimate by maximizing the joint posterior |
pairs.stanfit |
Create a matrix of output plots from a 'stanfit' object |
plot-method |
Plots for stanfit objects |
print.stanfit |
Print a summary for a fitted model represented by a 'stanfit' object |
quietgg |
ggplot2 for RStan |
read_rdump |
Read data in an R dump file to a list |
read_stan_csv |
Read CSV files of samples generated by (R)Stan into a 'stanfit' object |
rstan |
RStan - R interface to Stan |
rstan-plotting-functions |
RStan Plotting Functions |
rstan.package.skeleton |
Create a Skeleton for a New Source Package with Stan Programs |
rstan_ggtheme_options |
Set default appearance options |
rstan_gg_options |
Set default appearance options |
rstan_options |
Set and read options used in RStan |
sampling |
Draw samples from a Stan model |
sampling-method |
Draw samples from a Stan model |
set_cppo |
Defunct function to set the compiler optimization level |
sflist2stanfit |
Merge a list of stanfit objects into one |
show-method |
Class 'stanfit': fitted Stan model |
show-method |
Class representing model compiled from C++ |
stan |
Fit a model using Stan |
stanc |
Translate Stan model specification to C++ code |
stanc_builder |
Translate Stan model specification to C++ code |
stanfit |
Class 'stanfit': fitted Stan model |
stanfit-class |
Class 'stanfit': fitted Stan model |
stanmodel-class |
Class representing model compiled from C++ |
stan_ac |
ggplot2 for RStan |
stan_demo |
Demonstrate examples included in Stan |
stan_dens |
ggplot2 for RStan |
stan_diag |
RStan Diagnostic plots |
stan_ess |
RStan Diagnostic plots |
stan_hist |
ggplot2 for RStan |
stan_mcse |
RStan Diagnostic plots |
stan_model |
Construct a Stan model |
stan_par |
RStan Diagnostic plots |
stan_plot |
ggplot2 for RStan |
stan_rdump |
Dump the data for a Stan model to R dump file in the limited format that Stan can read. |
stan_rhat |
RStan Diagnostic plots |
stan_scat |
ggplot2 for RStan |
stan_trace |
ggplot2 for RStan |
stan_version |
Obtain the version of Stan |
summary-method |
Summary method for stanfit objects |
traceplot |
Markov chain traceplots |
traceplot-method |
Markov chain traceplots |
unconstrain_pars |
Model's 'log_prob' and 'grad_log_prob' functions |
unconstrain_pars-method |
Model's 'log_prob' and 'grad_log_prob' functions |
vb |
Run Stan's variational algorithm for approximate posterior sampling |
vb-method |
Run Stan's variational algorithm for approximate posterior sampling |